PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1043
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 265aa    MW: 30861.5 Da    PI: 6.1065
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1043genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.2e-141868148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                              +g+WT++Ed +l+  v ++G ++W+ Ia+  g   + R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA1043 18 KGPWTEQEDYKLAYFVGLFGDRRWDFIAKVSGlegLSRSGKSCRLRWVNYL 68
                              79***********************************************97 PP
2Myb_DNA-binding53.65.2e-1774119148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++T++E+ l  +++ ++G++ W++Iar+++ gRt++++k++w++++
  Tp57577_TGAC_v2_mRNA1043  74 RGKMTPQEERLVMEYHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 119
                               89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.0621368IPR017930Myb domain
SuperFamilySSF466894.9E-2817115IPR009057Homeodomain-like
SMARTSM007179.4E-131770IPR001005SANT/Myb domain
PfamPF002499.5E-131868IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-191974IPR009057Homeodomain-like
CDDcd001671.25E-82068No hitNo description
PROSITE profilePS5129426.16869123IPR017930Myb domain
SMARTSM007171.6E-1573121IPR001005SANT/Myb domain
PfamPF002492.4E-1574118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2375121IPR009057Homeodomain-like
CDDcd001671.13E-1076119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
LIKIPHKKMV EQEIISRKGP WTEQEDYKLA YFVGLFGDRR WDFIAKVSGL EGLSRSGKSC  60
RLRWVNYLHP DLKRGKMTPQ EERLVMEYHS KWGNRWSRIA RKLPGRTDNE IKNYWRTHMR  120
KVRAQEKKHA TPSTISSPDQ SSSCQSSLFS NNNHAVDSHA SYQEVGEENY QVQEIVEGYS  180
MDDIWKDIAM SEDDINIFQP VNDGHSEENC NFSGPIMPST SSWDYSNLDP LWVMDEEERK  240
MLFPPIGDQY FSFYDQQGNT FLTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-27181214103MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-27712149157MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-27712149157MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-27181214103C-Myb DNA-Binding Domain
1msf_C2e-27181214103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1043
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1392881e-142BT139288.1 Medicago truncatula clone JCVI-FLMt-11A19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606615.21e-123transcription factor MYB59 isoform X1
SwissprotQ9LX824e-74MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A2Z6NMQ81e-168A0A2Z6NMQ8_TRISU; Uncharacterized protein
STRINGAES888121e-151(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.14e-75myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]