PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10365
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 447aa    MW: 49615.4 Da    PI: 6.517
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10365genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.4e-063373751154
                                HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Tp57577_TGAC_v2_mRNA10365 337 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 375
                                5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.576326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.08E-7336379No hitNo description
SuperFamilySSF474591.27E-11336393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0049337381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-9340383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MSEEQFQASG NWWETPARNM RYESIEQQQQ QQSSSFGGWQ QQQQHQHHDT MSASGSSSVV  60
FHDTTQKLQP SDSSTSNNDS NLHMMGLGLS SQTIDWNQAS LLRGEKASEG SFRSMLQENL  120
NTSSTNFEQE TGGVGVGVGL SHQVNWRSQE KLFTNESSSN EFKQVNRGFS LDQTQFSPQY  180
SSGDSNMISQ MDSSALYVNT SILQGLLGNE TNQIQPQHGN NSFENRSMNF PYSITSYGLS  240
TNELMPSWSK LPHQKQQPNN QLHFTNNAPF WNANSETTIK DASSSFLPPF STPNFSAQTK  300
NISEGRDSSS VVKKSGSEPA PKRSRNETPS PLPAFKVRKE KMGDRITALQ QLVSPFGKTD  360
TASVLSEAIE YIKFLHEQVT VLSTPYMKSG APIQHQQSSG KSKEAEGPKQ DLRSRGLCLV  420
PVSSTFPMTH EPTVEYWTPT FGGTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10365
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150392e-42AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445670.10.0transcription factor bHLH123 isoform X1
SwissprotQ8GXT32e-85BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A072TR480.0A0A072TR48_MEDTR; BHLH transcription factor-like protein
STRINGAES837430.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-87bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]