PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10155
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 536aa    MW: 59676.7 Da    PI: 6.7543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10155genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.50.000274294631655
                                HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                + +++  L++++ +      +K + a++L +A+ YIk+L+
  Tp57577_TGAC_v2_mRNA10155 429 LADKITALQQIVSPF-----GKTDTASVLFEAIGYIKYLE 463
                                678999999999998.....8*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.934413462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.23E-4428467No hitNo description
SuperFamilySSF474591.22E-8428477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-8428470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MSEECGGNTI ATSTTPLNWW YLQASNSLSS NWNDVNKHAW NNQINNPNSS SSCEDQDISV  60
SSTSFTNASN HSSLTVESSR RVFVEPHAPP SSNDFMAEHA SDNQLWSHVL SGVGSNGELH  120
NNQEIGENFL DGLASKTMTN TMFDQPACDY LKKLDATNWE YTNGSTSFNT SFEKHLNGYS  180
EALIENNERL TKLSNLVSTW SIAPPDPEVS SHFDTQTNNN MSNNLNNSSS NMDNHFESDP  240
NCHFKQLPFG DSTSCTIGGV GNKMFPNFHD QDMNKVKQEF NHHASEVMQQ GHVFGKSFNP  300
NGYLDGFNNR LNSMGDSNNG KFYQGLPNIS PCTKTFSDVI SFNSRFGRPI LGIHAQRPSM  360
KYSNLSELKK QSLQTPSHMR NSNGRGEGTT REVKKKRSEE SSEASLKKPK QDPSTTNSSS  420
KVQAPKVKLA DKITALQQIV SPFGKTDTAS VLFEAIGYIK YLEEQVQLLS NPYLKANSHK  480
DPRGSYFDRK DKEDAKMDLR SKGLCLVPTS CTPLVYRENT GPDYWTPAYR GCLYR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10155
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1350510.0BT135051.1 Medicago truncatula clone JCVI-FLMt-18M3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469430.10.0transcription factor bHLH111 isoform X1
TrEMBLA0A072VPZ10.0A0A072VPZ1_MEDTR; BHLH transcription factor-like protein
STRINGXP_004496220.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101162629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.11e-43bHLH family protein