PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10138
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 538aa    MW: 61520.6 Da    PI: 9.763
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10138genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.12.3e-2121108190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                +f+ +Y+k+ GF vrk++ +k+k +g it+ +fvC keg+++++k++    +++raetr gC+a++ ++++ +gk++++++++ 
  Tp57577_TGAC_v2_mRNA10138  21 QFWVQYGKKYGFGVRKHYLNKRKADGLITSCKFVCCKEGSKSKDKRS-FLVKKPRAETRSGCDASISLTLK-NGKFVIQDFVET 102
                                69*****************************************9999.9999*******************.************ PP

                       FAR1  85 HnHela 90 
                                HnH l+
  Tp57577_TGAC_v2_mRNA10138 103 HNHLLQ 108
                                ***885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.2E-1821107IPR004330FAR1 DNA binding domain
PfamPF105511.1E-28230324IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MTINMIPSVG MQFDGVDVAW QFWVQYGKKY GFGVRKHYLN KRKADGLITS CKFVCCKEGS  60
KSKDKRSFLV KKPRAETRSG CDASISLTLK NGKFVIQDFV ETHNHLLQYT ETTHMLASHR  120
KISEVQAYEI EMAQDSGLKQ KASFQLMRTH AGGRANLGFT RLDAKNYLQT KRQHDMVHGD  180
LGSLMQYFQR QMLDNPSFYH AYQMDCDEQI TNIFWADAKM ILDYGYFGDV VSLDTTYCTN  240
RANRPLALFS GFNHYRGTLI FGAALLYDET AESFKWLFET FLKAHGSKKP QTMFTDQAPA  300
MAKALANVMP ETRHGLCTWH LMQNGIKNLT TLMKGGSHFL SDFKKCMYEY DQEAKFEAAW  360
SKLVTEYDVS NRSWVKLMYG IKQKWAACHM KKAFTLGMLA ADVSISESLH KLVEKGVYDL  420
CKLVMEVRLH ETGKINDKSD VPIVTEEYKT QASGIKIRPG FTSRRKRLKS WVERMPKKRS  480
RATTVKSKPS QRSKDIQSPS QMERETSTLA QSTCEFSQKN ENNFSFTGLL MEQSNNG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10138
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632639.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2Z6MT370.0A0A2Z6MT37_TRISU; Uncharacterized protein
STRINGXP_004490690.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-82FAR1-related sequence 5