PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA10039 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 301aa MW: 32760.8 Da PI: 7.3654 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.8 | 1.3e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+ Tp57577_TGAC_v2_mRNA10039 4 SCNGCRVLRKGCSENCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGL 87 6*********************************************************************************** PP DUF260 80 ilklqqqleqlkaelallke 99 ++++++ql+q+++e++l ++ Tp57577_TGAC_v2_mRNA10039 88 LWSGSWQLCQAAVEAVLKGA 107 **************998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 2.7E-99 | 1 | 296 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 16.983 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.4E-25 | 4 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSENCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLVNAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PITSEAAANG 120 RGPPLKAYDI RHVSKDENSA ASNELTQQRV KTRSRKRSNL AKPKETTDEE KSSNDNKGVE 180 SGSVEPVEEV MNGSGSHESS ISHQSEAVNA AAVDGESKES ESETSMILFR DEPEKESNRN 240 LKRSDRTSES GEENVGLELT LGLEPVSRVY HVVPVKKRRV ELKDCGGGSW NVELGLQYPA 300 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA10039 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143155 | 0.0 | BT143155.1 Medicago truncatula clone JCVI-FLMt-7I21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012568012.1 | 0.0 | LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 1e-110 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A2K3N7Y0 | 0.0 | A0A2K3N7Y0_TRIPR; LOB domain-containing protein 41-like | ||||
STRING | XP_004489144.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-104 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA10039 |