PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TCP
Protein Properties Length: 409aa    MW: 46046.4 Da    PI: 9.8899
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10004genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP147.78e-461152652133
                        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssas 71 
                                ++kkdrhski+T++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t++WL++++k+aik+lt++              s+ss+s
  Tp57577_TGAC_v2_mRNA10004 115 PVKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKDLTKSkqknknseggdatkSFSSSS 198
                                68**************************************************************88888888888877777778 PP

                        TCP  72 eceaesssssasnsssg.......kaaksaakskksqksaas.alnlakesrakarararertrekmrik 133
                                +ce+++   ++s s  +       ++ ++ + ++ + k++a+   n++kesr+karararert++k +++
  Tp57577_TGAC_v2_mRNA10004 199 DCEDSEVAINDS-S--NlqmegvgSKFEERKLKRVQMKEPACvRANKMKESREKARARARERTSNKISNN 265
                                884433333333.2..233577866666666555555555551568888*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-42116263IPR005333Transcription factor, TCP
PROSITE profilePS5136935.805117175IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.607244261IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MFPYSSNPYP SFLPSSSSSS LFPFPFLNPE NASSNTNNNN NTLFLDPFSI PYIPTHHSHP  60
HHPNITNIPE TLNNLAVSQE NNNSNIAVSM PKQDPSTLGG SNSHYGISCF LTKKPVKKDR  120
HSKIYTSQGL RDRRVRLSIE IARKFFDLQD MLGFDKASNT LDWLFTKSKK AIKDLTKSKQ  180
KNKNSEGGDA TKSFSSSSDC EDSEVAINDS SNLQMEGVGS KFEERKLKRV QMKEPACVRA  240
NKMKESREKA RARARERTSN KISNNIRGVQ EVELKKKYEN NLQAFQQSRS SQDHQLVSSN  300
EGPRNDFNVI EESIVIKRKL KPSMMVSHHN HNHHHHHNHQ NHVIPKEATS FNNNGDYHFL  360
PNSSPNWDAN NGTSSTNRST FCAIASMNLS TGMSCVSVCV LFFIKNNC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451264.10.0transcription factor DICHOTOMA
TrEMBLA0A2Z6PKF40.0A0A2Z6PKF4_TRISU; Uncharacterized protein
STRINGAES841860.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.23e-30TCP family protein