PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA10004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | TCP | ||||||||
Protein Properties | Length: 409aa MW: 46046.4 Da PI: 9.8899 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 147.7 | 8e-46 | 115 | 265 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssas 71 ++kkdrhski+T++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t++WL++++k+aik+lt++ s+ss+s Tp57577_TGAC_v2_mRNA10004 115 PVKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKDLTKSkqknknseggdatkSFSSSS 198 68**************************************************************88888888888877777778 PP TCP 72 eceaesssssasnsssg.......kaaksaakskksqksaas.alnlakesrakarararertrekmrik 133 +ce+++ ++s s + ++ ++ + ++ + k++a+ n++kesr+karararert++k +++ Tp57577_TGAC_v2_mRNA10004 199 DCEDSEVAINDS-S--NlqmegvgSKFEERKLKRVQMKEPACvRANKMKESREKARARARERTSNKISNN 265 884433333333.2..233577866666666555555555551568888*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.1E-42 | 116 | 263 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.805 | 117 | 175 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.607 | 244 | 261 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MFPYSSNPYP SFLPSSSSSS LFPFPFLNPE NASSNTNNNN NTLFLDPFSI PYIPTHHSHP 60 HHPNITNIPE TLNNLAVSQE NNNSNIAVSM PKQDPSTLGG SNSHYGISCF LTKKPVKKDR 120 HSKIYTSQGL RDRRVRLSIE IARKFFDLQD MLGFDKASNT LDWLFTKSKK AIKDLTKSKQ 180 KNKNSEGGDA TKSFSSSSDC EDSEVAINDS SNLQMEGVGS KFEERKLKRV QMKEPACVRA 240 NKMKESREKA RARARERTSN KISNNIRGVQ EVELKKKYEN NLQAFQQSRS SQDHQLVSSN 300 EGPRNDFNVI EESIVIKRKL KPSMMVSHHN HNHHHHHNHQ NHVIPKEATS FNNNGDYHFL 360 PNSSPNWDAN NGTSSTNRST FCAIASMNLS TGMSCVSVCV LFFIKNNC* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA10004 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013451264.1 | 0.0 | transcription factor DICHOTOMA | ||||
TrEMBL | A0A2Z6PKF4 | 0.0 | A0A2Z6PKF4_TRISU; Uncharacterized protein | ||||
STRING | AES84186 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 3e-30 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA10004 |