PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp_un1580_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bHLH | ||||||||
Protein Properties | Length: 234aa MW: 25505.9 Da PI: 6.9171 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.5 | 0.00014 | 210 | 230 | 9 | 29 |
HHHHHHHHHHHHHHHHCTSCC CS HLH 9 ErrRRdriNsafeeLrellPk 29 ++RR+ri +++ L+el+P+ Tp_un1580_001 210 AKNRRERISERLKVLQELVPN 230 69******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 8.3E-4 | 201 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.512 | 201 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.19E-4 | 203 | 230 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MALVNDHLSK PNSSEDLSSP ENYGLDHTEL AYAGGEGGGS ASSSSTMNSD HHQQNHQGFV 60 FYPSQETIED HNSSMDFNTL SFLSFDHQRN FIPPASVLEG NMSYGYTGWS HNQFDSISPR 120 VIKTPSCFET TSSFGLTKPE TNHANGDWLY SDSTIVNAGS RHESASPKSA GHKRPFTGEN 180 TQALKKCTGA NGKAKPKATT SPKDPQSLAA KNRRERISER LKVLQELVPN GTKV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp_un1580_001 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405832.1 | 1e-122 | putative transcription factor bHLH086 | ||||
Swissprot | Q9FJ00 | 1e-110 | BH086_ARATH; Putative transcription factor bHLH086 | ||||
TrEMBL | A0A1J3DLI0 | 1e-122 | A0A1J3DLI0_NOCCA; Uncharacterized protein | ||||
STRING | XP_006405832.1 | 1e-122 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4260 | 28 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37800.1 | 1e-110 | RHD SIX-LIKE 1 |
Publications ? help Back to Top | |||
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