PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp_un1100_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C3H | ||||||||
Protein Properties | Length: 332aa MW: 37162.4 Da PI: 7.5727 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 48.2 | 1.7e-15 | 259 | 283 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C+yGd+C+FaHg Tp_un1100_001 259 KTELCNKWQETGACPYGDNCQFAHG 283 9***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-19 | 252 | 290 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-11 | 255 | 289 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.464 | 257 | 285 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.6E-8 | 257 | 284 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-12 | 259 | 283 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-12 | 291 | 324 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.14E-8 | 291 | 325 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.3E-5 | 295 | 322 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.972 | 295 | 323 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth | ||||
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis | ||||
GO:0003729 | Molecular Function | mRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MEKDASTVTD LACVTALNSP PPPLSPQSDK SNNKQHQEDF AASFASLYNS IFSPESQFPS 60 SLSLSPSPPS SSSPPARVDT TTEHRLRQAR LILEYDELNE HYELCFSRLQ SLMTELDSLR 120 HENDALRQEN LDLLKLIHIS TSSSSSVSPP AVHNRHNRHQ ISDSDSQAEA GAYKHYRSAR 180 RNNPERTSLP KSISVRSPGY LKMMSQGSHG CGGANRQTSQ LSNFTSQLGS DSVSQKVCVP 240 TKGERDALEL EVYRQGMMKT ELCNKWQETG ACPYGDNCQF AHGIDELRPV IRHPRYKTEV 300 CRMIVTGATC PYGHRCHFRH SLTDQERMLL AR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 1e-21 | 258 | 321 | 4 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp_un1100_001 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC013288 | 3e-83 | AC013288.7 Arabidopsis thaliana chromosome 1 BAC F4N21 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 3e-83 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006391435.1 | 1e-172 | zinc finger CCCH domain-containing protein 14 | ||||
Refseq | XP_024009317.1 | 1e-172 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q9C9N3 | 1e-144 | C3H14_ARATH; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A1J3HSH1 | 1e-177 | A0A1J3HSH1_NOCCA; Zinc finger CCCH domain-containing protein 14 (Fragment) | ||||
STRING | XP_006391435.1 | 1e-172 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10623 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 1e-141 | C3H family protein |