PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un0326_001
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GRAS
Protein Properties Length: 444aa    MW: 49591 Da    PI: 6.7519
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un0326_001genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4263e-130424441374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaal.............. 81 
                    l++lL+++A++vs+++ ++aq+lL+ ls ++sp+gd+++Rl++ f +AL+ r++r +++ +++ +++++t+e++ss++++++              
  Tp_un0326_001  42 LRRLLFAAADFVSQSNVSAAQNLLSILSANSSPYGDSTERLVHLFSKALSLRINRqQQDPTAANVATWTTNEMTSSTVFTSTvckeqflfrtknnn 137
                    6899***************************************************777888888999999999988877777899999**9**999 PP

           GRAS  82 ........klfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetge 163
                              +++++P+++f+hltaNqaIl+a+e++   ++Hi+D+disqGlQWp+L+qaLa+R+    ++ppslRiTg+g+    + + l++tg+
  Tp_un0326_001 138 sdfescyyLWLNQLTPFIRFGHLTANQAILDATETDgnGALHILDLDISQGLQWPPLMQALAERSsnpsSPPPSLRITGCGR----DVTGLNRTGD 229
                    9999865444**********************99876699************************988877799*********....********** PP

           GRAS 164 rLakfAeelgvpfefnvl..vakrledl..eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                    rL++fA++lg++f+f++l  v+++l+ l  +++ L+++   gE++aVn+v+ lhr++++++++     ++L+++ksl+P++v+++e+ea+h+++sF
  Tp_un0326_001 230 RLTRFANSLGLQFQFHTLviVEEDLAGLllQIRLLALSAvqGETIAVNCVHFLHRFFNDDGDMIG---HFLSAIKSLNPRIVTMAEREANHGDHSF 322
                    *****************965444554333366666666566**********************99...**************************** PP

           GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg 348
                    l+rf+ea+++y+a+fdslea+lp++s+er ++E++++g+ei +vva+e aer++rh+++e W+e +++ GF +vp++++a +qaklllr ++ s+g
  Tp_un0326_001 323 LNRFSEAVDHYVAIFDSLEATLPPNSRERLTLEQRWFGKEIFDVVAAEAAERKQRHRRFEIWEEIMKRYGFVNVPIGSFAFSQAKLLLRLHYpSEG 418
                    ************************************************************************************************ PP

           GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374
                    y+++  ++sl+lgW++r L+svS+W+
  Tp_un0326_001 419 YSLQFLNNSLFLGWQNRLLFSVSSWK 444
                    *************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.70416423IPR005202Transcription factor GRAS
PfamPF035141.0E-12742444IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MLASFKSSSS SSEDATTATE NPPPPPLCLA SSSAATSAAH HLRRLLFAAA DFVSQSNVSA  60
AQNLLSILSA NSSPYGDSTE RLVHLFSKAL SLRINRQQQD PTAANVATWT TNEMTSSTVF  120
TSTVCKEQFL FRTKNNNSDF ESCYYLWLNQ LTPFIRFGHL TANQAILDAT ETDGNGALHI  180
LDLDISQGLQ WPPLMQALAE RSSNPSSPPP SLRITGCGRD VTGLNRTGDR LTRFANSLGL  240
QFQFHTLVIV EEDLAGLLLQ IRLLALSAVQ GETIAVNCVH FLHRFFNDDG DMIGHFLSAI  300
KSLNPRIVTM AEREANHGDH SFLNRFSEAV DHYVAIFDSL EATLPPNSRE RLTLEQRWFG  360
KEIFDVVAAE AAERKQRHRR FEIWEEIMKR YGFVNVPIGS FAFSQAKLLL RLHYPSEGYS  420
LQFLNNSLFL GWQNRLLFSV SSWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-605044327378Protein SCARECROW
5b3h_A1e-605044326377Protein SCARECROW
5b3h_D1e-605044326377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023280.0AC002328.2 Genomic sequence for Arabidopsis thaliana BAC F20N2 from chromosome I, complete sequence.
GenBankAC0052230.0AC005223.1 Arabidopsis thaliana chromosome I BAC T5A14, complete sequence.
GenBankAY1964820.0AY196482.1 Arabidopsis thaliana lateral suppressor (LAS) mRNA, complete cds.
GenBankBT0265190.0BT026519.1 Arabidopsis thaliana At1g55580 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006392620.10.0scarecrow-like protein 18
SwissprotQ9ZWC50.0SCL18_ARATH; Scarecrow-like protein 18
TrEMBLV4MF510.0V4MF51_EUTSA; Uncharacterized protein
STRINGXP_006392620.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113292733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.10.0GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]