PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un0315_001
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ARR-B
Protein Properties Length: 430aa    MW: 48325.6 Da    PI: 9.7809
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un0315_001genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like62.77.1e-20202253153
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                    k+++ W   LH+ F++a++++ G +kA+Pk+ile+m+v  Lt+ehv+SHLQ +
  Tp_un0315_001 202 KNKISWVDSLHDLFLQAIQHI-GLDKAVPKKILEFMNVSYLTREHVASHLQVH 253
                    6799*****************.*****************************75 PP
2Response_reg21.31.3e-081476154
                   EEEESSSHHHHHHHHHHHHHTTC.....EEEE..EESSHHHHHHHHHHHH..ESEEEEESSCT CS
   Response_reg  1 vlivdDeplvrellrqalekegy.....eeva..eaddgeealellkekd..pDlillDiemp 54
                   +++vdD+p++++++ ++lek++y     +e++    +d++eal  lk ++  +Dl+++D  m 
  Tp_un0315_001 14 IMVVDDDPVFLQIISRMLEKSKYrdpsiMEITfiPIKDSKEALPALKMQRnnIDLVITDYYMH 76
                   89*****************88885554445553446899*****99777777*******9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23005.6E-11778No hitNo description
SMARTSM004487.5E-512110IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521726.4E-1112122IPR011006CheY-like superfamily
PROSITE profilePS5011011.07513152IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.4E-51476IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.66E-915114No hitNo description
Gene3DG3DSA:1.10.10.601.2E-19200259IPR009057Homeodomain-like
SuperFamilySSF466895.02E-14200259IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-23202253IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MGFYNQSSVL RINIMVVDDD PVFLQIISRM LEKSKYRDPS IMEITFIPIK DSKEALPALK  60
MQRNNIDLVI TDYYMHVISS DTTKEQESLT CRAMCFIPKP IKATDLTKIY QLVLTYKRNG  120
KSIVWTDQNH KDTDVSIPQQ IQSLPEQANS LKTKFSSRSD TRSVNSSNGT CVSTDGSRKN  180
RKRKSNSGSG VDAESMSKPS KKNKISWVDS LHDLFLQAIQ HIGLDKAVPK KILEFMNVSY  240
LTREHVASHL QVHKKFLRKV AEQGFVCSSM LPGRGIESTF PFAQIRNPYY NNYTPSTSSY  300
DTSLNNRSFY SKPGYCLGQS RLLSNTGEPV SFNQLPYNYI HWSSTYEPHR IGSNLTMPIQ  360
SNLNFSTQPS QVLGFGHGLS TISGNSFNNN TMSSYESSTS NQLGMSSHGS LTLNQPGMSS  420
YGSLTSIQPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-15201261464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012265.10.0putative two-component response regulator ARR21 isoform X1
RefseqXP_024012266.10.0putative two-component response regulator ARR21 isoform X2
SwissprotQ9LYP51e-177ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLV4KRT80.0V4KRT8_EUTSA; Uncharacterized protein
STRINGXP_006399202.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.11e-167response regulator 21