PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp_un0024_006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 723aa MW: 79638.9 Da PI: 5.722 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.5 | 1.3e-19 | 67 | 123 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+ qVk+WFqN+R+++k+ Tp_un0024_006 67 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKN 123 688999************************************************995 PP | |||||||
2 | START | 222.2 | 1.6e-69 | 254 | 467 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 la +a++el+++a+++ep+W++++ ++++e+ ++f+++ + +++ea+r+s+vv+m++++ ve+l+d++ qW+ +a +a+tl+v+s+g Tp_un0024_006 254 LAVAAMEELMRMAQVDEPLWKSLA--LDEEEYARTFPRGIGpkpagFRSEASRESVVVIMNHVNIVEILMDVN-QWSMVFAgmvsRAMTLAVLSTG 346 6789********************..************999********************************.********************** PP ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 galq+m+ae+q++splvp R+ +f+Ry++q+ +g+w++vd+S+d+ q +p vR++++ Sg+li++++ng+skvtwvehv++++r + Tp_un0024_006 347 vagnynGALQVMTAEFQVPSPLVPtRETYFARYCKQQADGSWAVVDISLDNLQLNPP----VRCRRRASGCLIQEMPNGYSKVTWVEHVEVDDRGV 438 ********************************************************8....*********************************** PP HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 178 hwllrslvksglaegaktwvatlqrqcek 206 h+l++++v++g+a+gak+wva l+rqce+ Tp_un0024_006 439 HNLYKHMVGTGHAFGAKRWVAILDRQCER 467 ***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 45 | 122 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.6E-19 | 55 | 124 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.471 | 64 | 124 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-18 | 65 | 128 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.2E-17 | 67 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.01E-19 | 67 | 125 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 99 | 122 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 42.54 | 244 | 470 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.96E-33 | 245 | 469 | No hit | No description |
CDD | cd08875 | 1.45E-123 | 248 | 466 | No hit | No description |
SMART | SM00234 | 7.0E-63 | 253 | 467 | IPR002913 | START domain |
Pfam | PF01852 | 9.6E-62 | 254 | 467 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 9.6E-5 | 346 | 433 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.08E-26 | 486 | 715 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 723 aa Download sequence Send to blast |
MFEPNMLLAA MNNEDSNNHN YNHEDNNNNN EGFLRDDEFD SANTKSGSEN QEGGSGNDQD 60 PLHPNKKKRY HRHTQLQIQE MEAFFKECPH PDDKQRKQLS RELGLEPLQV KFWFQNKRTQ 120 MKNHHERHEN SHLRAENEKL RGDNLRYREA LANASCPNCG GPTAIGEMSF DEHQLRLENA 180 RLREEIDRIS AIAAKYVGKP VSNYPLMSPP PLPPRPLELA MGNFGGDVYG NNATDLFKSI 240 TAPTESDKPV IIDLAVAAME ELMRMAQVDE PLWKSLALDE EEYARTFPRG IGPKPAGFRS 300 EASRESVVVI MNHVNIVEIL MDVNQWSMVF AGMVSRAMTL AVLSTGVAGN YNGALQVMTA 360 EFQVPSPLVP TRETYFARYC KQQADGSWAV VDISLDNLQL NPPVRCRRRA SGCLIQEMPN 420 GYSKVTWVEH VEVDDRGVHN LYKHMVGTGH AFGAKRWVAI LDRQCERLAS VMATNISSGE 480 VGVITNQEGR RSMLKLAERM VISFCAGVSA STAHTWTTLS GTGAEDVRVM TRKSVDDPGR 540 PPGIVLSAAT SFWIPVPPKR VFDFLRDENS RNEWDILSNG GVVQEMAHIA NGRDTGNCVS 600 LLRVNSANSS QSNMLILQET CTDPTASFVI YAPVDIVAMN IVLNGGDPDY VALLPSGFAI 660 LPDGHANGGA SGGEGGSLLT VAFQILVDSV PTAKLSLGSV ATVNNLIACT VERIKASMSC 720 ETA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK316776 | 0.0 | AK316776.1 Arabidopsis thaliana AT1G05230 mRNA, complete cds, clone: RAFL09-78-H10. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001184911.1 | 0.0 | homeodomain GLABROUS 2 | ||||
Refseq | NP_001322673.1 | 0.0 | homeodomain GLABROUS 2 | ||||
Refseq | NP_001322674.1 | 0.0 | homeodomain GLABROUS 2 | ||||
Refseq | NP_001322675.1 | 0.0 | homeodomain GLABROUS 2 | ||||
Refseq | NP_001322676.1 | 0.0 | homeodomain GLABROUS 2 | ||||
Refseq | NP_001322677.1 | 0.0 | homeodomain GLABROUS 2 | ||||
Refseq | NP_001322678.1 | 0.0 | homeodomain GLABROUS 2 | ||||
Refseq | NP_001322680.1 | 0.0 | homeodomain GLABROUS 2 | ||||
Refseq | NP_172015.1 | 0.0 | homeodomain GLABROUS 2 | ||||
Refseq | NP_849596.1 | 0.0 | homeodomain GLABROUS 2 | ||||
Refseq | XP_020870784.1 | 0.0 | homeobox-leucine zipper protein HDG2 isoform X1 | ||||
Refseq | XP_020870785.1 | 0.0 | homeobox-leucine zipper protein HDG2 isoform X1 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | B9DFH8 | 0.0 | B9DFH8_ARATH; AT1G05230 protein | ||||
STRING | AT1G05230.4 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |