PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un0002_054
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 302aa    MW: 34517.8 Da    PI: 5.9933
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un0002_054genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.28.4e-15111162155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+++I++L+
  Tp_un0002_054 111 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRCDQASIVGGAINFIRQLE 162
                    79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.751110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-15110169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-12110166No hitNo description
PfamPF000103.8E-12111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-14111166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-10116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MALEGMICQD SYNGNEAYSN IYTDDEPPFY DLQASLSFFD NQTENYDSTF LQEGYYGNTT  60
TFFHQQPHEI VTNEEKTTPS CDMSFHQDMG KSQVTRSRTR AKKNKEEIYN QRMTHIAVER  120
NRRKQMNEYL SVLRSLMPES YVQRCDQASI VGGAINFIRQ LEHRLHLQNL NGEPNENSLS  180
KSYISSDTPF SDTFKLPQFS MSSSSVSENM VLEVNALADI EVSLVESHAS LKVRSRKRPK  240
LLLNLVSGLQ SLGFIILHLN VSTVSDFVLY CFSTKMEDCC KLTSVTDIAT AVYKMLKIHH  300
DS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111122RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013730047.10.0transcription factor bHLH96
SwissprotQ9C7T41e-64BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A078HWF90.0A0A078HWF9_BRANA; BnaA09g15620D protein
TrEMBLA0A078JGA70.0A0A078JGA7_BRANA; BnaC09g51650D protein
TrEMBLA0A397XUL60.0A0A397XUL6_BRACM; Uncharacterized protein
TrEMBLA0A3P6DTB20.0A0A3P6DTB2_BRAOL; Uncharacterized protein
STRINGBo9g055890.11e-168(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142991821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]