PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g36770
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family DBB
Protein Properties Length: 235aa    MW: 26002 Da    PI: 6.4895
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g36770genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.8e-06533634
   zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeH 34
               C+ ++++e++ fC  ++  lC+ C  + H
  Tp7g36770  5 CDMCDKEEATVFCCADEAALCNGCDRHVH 33
               *************************9988 PP
2zf-B_box29.22e-095592338
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
               ++ C+ ++e ++ lfC++++  lC++C   +H+   Ht
  Tp7g36770 55 APLCDICGERRALLFCQEDRAILCRECDIPIHQAnqHT 92
               789*****************************667776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
SMARTSM003362.4E-6447IPR000315B-box-type zinc finger
CDDcd000216.07E-5533No hitNo description
PROSITE profilePS5011910.0453100IPR000315B-box-type zinc finger
SMARTSM003362.4E-1653100IPR000315B-box-type zinc finger
PfamPF006439.0E-85593IPR000315B-box-type zinc finger
CDDcd000216.14E-1056100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MKIWCDMCDK EEATVFCCAD EAALCNGCDR HVHFANKLAG KHLRFSLTSP TFKDAPLCDI  60
CGERRALLFC QEDRAILCRE CDIPIHQANQ HTKKHNRFLL TGVKISASPS AYPRGSNSNS  120
AAALGRAKTR PKSISGEVPS SASSEVFASS PSTTTSNYYY GLDENCHQVS DSGCTGSISE  180
YLMETLPGWK VEDLLEHPSC VSYEDNILCT NKNSNNESYR VYDGSSQYHH QGFFS
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g36770
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2303790.0AK230379.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-29-C17.
GenBankBT0288930.0BT028893.1 Arabidopsis thaliana unknown protein (At4g39070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629361.11e-146PREDICTED: B-box zinc finger protein 20
RefseqXP_013702049.11e-146B-box zinc finger protein 20
SwissprotQ0IGM71e-140BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A078FGM41e-144A0A078FGM4_BRANA; BnaC03g60330D protein
TrEMBLA0A0D3BJC31e-144A0A0D3BJC3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AWA71e-144A0A3P6AWA7_BRAOL; Uncharacterized protein
STRINGBo3g149790.11e-145(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65972743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-129DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]