PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g34770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | HSF | ||||||||
Protein Properties | Length: 280aa MW: 30986.5 Da PI: 5.5135 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 117.6 | 7.3e-37 | 12 | 103 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++++sw+e+g++fvv+++ efak++Lp+yFkh+nf+SF+RQLn+YgF+k+ ++ weF++++F++g+++ll++i+ Tp7g34770 12 FLSKTYQLVDDQSTDDVVSWNEDGTAFVVWKTAEFAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDK---------WEFANENFRRGQEDLLSEIR 99 9***************************************************************9999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+ks Tp7g34770 100 RRKS 103 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.1E-39 | 4 | 95 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.2E-59 | 8 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.9E-34 | 9 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.1E-33 | 12 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-20 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-20 | 50 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.0E-20 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MMAAQRSVPA PFLSKTYQLV DDQSTDDVVS WNEDGTAFVV WKTAEFAKDL LPQYFKHNNF 60 SSFIRQLNTY GFRKTVPDKW EFANENFRRG QEDLLSEIRR RKSVIAAAGK CVVVGSPSAE 120 SNSAGDDHGS SSTSSPGSKN PGSVENMVAD LSGENEKLKR ENNSLSSELA AAKRQRDELV 180 AFLMEQMKVG PDQIDQMIKG GKFKPVDSST DEESDCEGCG AGEEREGVGE GLKLFGVWLK 240 GERKKRDRDE KSFVVGGSHT TEIKNVDFHA PLWKSSKVCN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-26 | 2 | 106 | 11 | 125 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g34770 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:9645433}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY120760 | 0.0 | AY120760.1 Arabidopsis thaliana heat shock transcription factor HSF4 (At4g36990) mRNA, complete cds. | |||
GenBank | BT003369 | 0.0 | BT003369.1 Arabidopsis thaliana heat shock transcription factor HSF4 (At4g36990) mRNA, complete cds. | |||
GenBank | Y14069 | 0.0 | Y14069.1 Arabidopsis thaliana mRNA for heat shock factor 4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009138768.1 | 1e-173 | PREDICTED: heat stress transcription factor B-1 | ||||
Swissprot | Q96320 | 1e-152 | HSFB1_ARATH; Heat stress transcription factor B-1 | ||||
TrEMBL | A0A3P5ZH61 | 1e-172 | A0A3P5ZH61_BRACM; Uncharacterized protein | ||||
STRING | Bra011735.1-P | 1e-172 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6101 | 25 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 1e-136 | heat shock factor 4 |