PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g34520
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family TALE
Protein Properties Length: 741aa    MW: 81543.7 Da    PI: 7.1253
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g34520genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.5e-095125491954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Tp7g34520 512 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 549
                664459******************************88 PP
2BELL122.71.5e-39370441172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                +r e+q++k+kLl++leeVd+rY++y+eq+q+v++sFe+v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+
  Tp7g34520 370 DRIEHQRRKVKLLTMLEEVDRRYNHYCEQMQMVVNSFEIVMGHGAALPYTALAQKAMSRHFRCLKDAVAAQL 441
                589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.630.306.3E-4213270IPR016181Acyl-CoA N-acyltransferase
SMARTSM005747.7E-78300439IPR006563POX domain
PfamPF075261.8E-50305438IPR006563POX domain
PROSITE profilePS5007112.568490553IPR001356Homeobox domain
SMARTSM003891.1E-9493557IPR001356Homeobox domain
CDDcd000863.44E-12493554No hitNo description
SuperFamilySSF466893.76E-17495560IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-28496559IPR009057Homeodomain-like
PfamPF059203.7E-18510549IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MGIDKTSPPT TIFLKTLHNN SMSQDYHHHH HHQNQGRIFS FPNGFDRSDS TSLTAQQKQE  60
SQRVEMDEES SVAGSGIPVY ETAGMLSEMF NFPGSSGAGG GDLHHGQSFR SNRQLLEQQH  120
QNIPAMNATD SAAAMQLFLM NPPPPQQPPS PASTTTTRNH HNSSTLHMLL PNPSHQQGYS  180
NTMSMHQLPH HHHQQPTWQS SPSSDHHHHH HHHHNSQTEI GTIHVENSRG QGLSLSLSSS  240
LEAAAKAEEY RKIYYGSNSS NASSHHQYNQ FKTLLGESSQ NHQVLNQFRS SPAASSSSSI  300
GAINILRNSR YTTAAQELLE EFCSVGRGFS KKNKLRKSSN PNASDGSGGG GGSTPSAGEI  360
KDHPPLSASD RIEHQRRKVK LLTMLEEVDR RYNHYCEQMQ MVVNSFEIVM GHGAALPYTA  420
LAQKAMSRHF RCLKDAVAAQ LRQSCELLGD KDAAGVSSSG LTKGETPRLR LLEQSLRQQR  480
AFHQMGMMEQ EAWRPQRGLP ERSVSILRAW LFEHFLHPYP SDADKHLLAR QTGLSRNQVS  540
NWFINARVRL WKPMVEEMYQ QESKEREREE ELEENEQDQE TKNSNDDKST KSNNNESNFT  600
AVRTTSQTPI TSAQSAATAP DADAAVATGH RLRSSDINAY ESDPSSLLLP SSSFSNAAAS  660
ATAVSSYGGS AGFSAVATCR KGVGGFGDAD MDGDNVIRFG TNPTGNVSLT LGLRHSGNVP  720
DKDPSFCVRD FGGVLDVSPF N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A7e-16499557563Homeobox protein Meis2
3k2a_B7e-16499557563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g34520
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1738160.0AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411954.10.0BEL1-like homeodomain protein 2
RefseqXP_024005715.10.0BEL1-like homeodomain protein 2
SwissprotQ9SW800.0BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLV4MDV40.0V4MDV4_EUTSA; Uncharacterized protein
STRINGXP_006411954.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.20.0BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]