PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g34400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | HB-other | ||||||||
Protein Properties | Length: 200aa MW: 22829.3 Da PI: 4.6278 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.3 | 2.3e-07 | 57 | 95 | 4 | 42 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLter 42 ++++t+eq++ Le F ++++ e++ +LA++lgL+ r Tp7g34400 57 KRKLTDEQVNMLEMSFGDEHKLESERKDKLAAELGLDPR 95 4589********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 2.76E-5 | 56 | 95 | No hit | No description |
SuperFamily | SSF46689 | 7.7E-5 | 57 | 95 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.0E-4 | 57 | 95 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 57 | 95 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MNHTVDDQNM AFISQLYPDL YTQIVPQQGE VKPPKRRRKK SKGAVAVGDG SNCLFRKRKL 60 TDEQVNMLEM SFGDEHKLES ERKDKLAAEL GLDPRWRKST TNSKNSHDNV VVDKCRLESE 120 VLQLKEQLYD AEREIQRLAE RVEGGSSNSP ISSSVSVEAN ETPFFGDYQV GDDGDDYDNL 180 FYPVPENSYI DGAEWMNLYI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 58 | RKKSKGAVAVGDGSNCLFRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g34400 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189549 | 2e-86 | AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013665374.1 | 1e-121 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 1e-113 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A398ANQ7 | 1e-120 | A0A398ANQ7_BRACM; Uncharacterized protein | ||||
STRING | Bo1g005450.1 | 1e-120 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2208 | 26 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 2e-87 | homeobox protein 40 |
Publications ? help Back to Top | |||
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