PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g34270
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GATA
Protein Properties Length: 192aa    MW: 20677.3 Da    PI: 8.8096
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g34270genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.11.6e-2086120135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Tp7g34270  86 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 120
                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.9E-1880132IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.90380116IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.47E-1383120No hitNo description
Gene3DG3DSA:3.30.50.103.1E-1784120IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.79E-1385117No hitNo description
PfamPF003203.8E-1886120IPR000679Zinc finger, GATA-type
PROSITE patternPS00344086111IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGFSMFFSSE NDVAHHSSPY ASVDCTLSLG TPSTRLCNDN DDRRFSSHTS NNVSNALGSW  60
DFLHGGKKGG GTGGGGGGNN LLSRRCANCD TTSTPLWRNG PRGPKSLCNA CGIRFKKEER  120
RASTTGNSTS GGGSTAAGVP ALDHHGGANY YYNNNNNNNN HYASSSPWIH HQHQNTQKIP  180
YYSPANNEIF FR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16470GGKKGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g34270
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937217e-80AB493721.1 Arabidopsis thaliana At4g36620 mRNA for hypothetical protein, partial cds, clone: RAAt4g36620.
GenBankBT0295067e-80BT029506.1 Arabidopsis thaliana At4g36620 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018513001.11e-101PREDICTED: GATA transcription factor 19-like
SwissprotQ6QPM29e-87GAT19_ARATH; GATA transcription factor 19
TrEMBLA0A078JVW31e-100A0A078JVW3_BRANA; BnaAnng31200D protein
STRINGBra017766.1-P1e-100(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61591746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.19e-76GATA transcription factor 19
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]