PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g33360

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Nin-like

Protein Properties

Length: 342aa MW: 39942.9 Da PI: 10.0272

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g33360	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.6	1.9e-26	212	261	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +sledlskyF pi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl Tp7g33360 212 AGLSLEDLSKYFGVPIVEASRNLNVGLTVLKKKCREFGIPRWPHRKIKSL 261 5699********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.167	196	281	IPR003035	RWP-RK domain
Pfam	PF02042	8.6E-22	214	261	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MAHSLTSLAI FQSVNRKEIT VRTLHVYGSV EIEREFLFET KSCYVEKKAK PLFLLEGLRR 60 PEISLGSVFS TWRCVFLFRS NHSLPRFPTL LCPSRNPKLE DIPNLANELK FISELKPKKA 120 SNISDQEQCS RVQYCNFDQP KLIELVFKED RVRDCDVDQP KPRKFFLKQD LNCLPNSETE 180 SEESEDNQIE HSESDAKPEM LKKKRTPSEH VAGLSLEDLS KYFGVPIVEA SRNLNVGLTV 240 LKKKCREFGI PRWPHRKIKS LDSLIHDLQK EAEKQQKNNK ILAMAVEKRQ KKLEREMRNI 300 VKRPSMEIDI ETRRFRQDNF KKRHRASRAK KNQESLNTSS ST

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MAHSLTSLAI FQSVNRKEIT VRTLHVYGSV EIEREFLFET KSCYVEKKAK PLFLLEGLRR  60
PEISLGSVFS TWRCVFLFRS NHSLPRFPTL LCPSRNPKLE DIPNLANELK FISELKPKKA  120
SNISDQEQCS RVQYCNFDQP KLIELVFKED RVRDCDVDQP KPRKFFLKQD LNCLPNSETE  180
SEESEDNQIE HSESDAKPEM LKKKRTPSEH VAGLSLEDLS KYFGVPIVEA SRNLNVGLTV  240
LKKKCREFGI PRWPHRKIKS LDSLIHDLQK EAEKQQKNNK ILAMAVEKRQ KKLEREMRNI  300
VKRPSMEIDI ETRRFRQDNF KKRHRASRAK KNQESLNTSS ST

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g33360

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL031135	4e-67	AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
GenBank	AL161587	4e-67	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	4e-67	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006412085.1	0.0	protein RKD5
Swissprot	O81791	1e-167	RKD5_ARATH; Protein RKD5
TrEMBL	V4MLF6	0.0	V4MLF6_EUTSA; Uncharacterized protein
STRING	XP_006412085.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12049	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-156	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]