PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g33050

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Nin-like

Protein Properties

Length: 977aa MW: 108291 Da PI: 5.8997

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g33050	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91	8.9e-29	650	700	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Tp7g33050 650 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 700 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.075	639	720	IPR003035	RWP-RK domain
Pfam	PF02042	5.7E-25	653	700	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.25E-24	865	956	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.5E-23	867	952	No hit	No description
PROSITE profile	PS51745	27.211	869	953	IPR000270	PB1 domain
SMART	SM00666	1.5E-26	869	953	IPR000270	PB1 domain
CDD	cd06407	2.16E-40	871	952	No hit	No description
Pfam	PF00564	1.4E-17	871	952	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 977 aa Download sequence Send to blast
MEGGSGGGDG GFLPNSSFGA FSETAMDMDF MEELFFDGCW LETTDGKNLK QVTGQPLSDS 60 TNMNDNNNNS YLYGYQFAEN PSQDRISNEE TGRKFTPLTP GFLKIEDLTN QPMNQGPLDQ 120 SAAMTSAQAE KFLHEETEGG RRWWIAPRTS QGPSSSVKDR LVQAIKGLNE AVQDKDFLIQ 180 IWVPIQQEGK NFLTTLEQPH FFNPKYLSLK RYRDVSVAYN FLADEGSKES VGLPGRVFLG 240 KLPEWTPDVR FFRSEEYPRI KEAQKCDVRG SLALPVFERG SGTCLGVVEI VTTTQKMNYR 300 PELENICKAL EAVNLRSSAN LKSPSIEFPE VYNQFYYAAL PEVSDFLTSV CRSYDLPLAL 360 TWAPCARQGK GGSRHSDENF SECVSTIDPA CFVLDKQSHN FLEACSEHHL LQGEGIVGKA 420 FKAIKLFFVP EVTTFSKTNY PLAHHAKISG LHAALAVPLK SKFNGSVEFV LEFFFPKACL 480 DTEAQQEMLK SLSVTLQQDF RSFNLVIDKE LELEVVFPVR EEVLFSEDPL VDAETGENLK 540 PLPLEEISQE DSSWISHMIK ANEKGKGVSL SWEYQKEEPK EEFMLTSGWD NNQIGRGHSS 600 FLSDAEQFQK ASNSGLRLDI DQSFESASFG VGQPLLGSRR PGEKRRTKTE KTIGLEVLRQ 660 YFAGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKIKKV GHSLKKLQLV IDSVQGVQGS 720 IQLDSFYTSF PELSSPNISG TGTSFKNNDQ STNLDAQTEN GVSAQGIAAA PRSPPSSSCS 780 HSSGSSTCCS TGANQSTNTA NTVTTLMAEN ASAILKRARS EVRLHTVNQE GTKSISRTLS 840 HKTFSEHPFF ENLPRLPESR SRILKAGGAS KVKATFGEAK VRFTLLPTWG FRELQQEIAR 900 RFNIDNNIAT FDLKYLDDDK EWVLLTCEAD LEECIDIYRL SQSRTIKISV HEASQFRLGG 960 SFGSTGPGPG PGPGPSI

Sequence ? help Back to Top

Protein Sequence Length: 977 aa Download sequence Send to blast

MEGGSGGGDG GFLPNSSFGA FSETAMDMDF MEELFFDGCW LETTDGKNLK QVTGQPLSDS  60
TNMNDNNNNS YLYGYQFAEN PSQDRISNEE TGRKFTPLTP GFLKIEDLTN QPMNQGPLDQ  120
SAAMTSAQAE KFLHEETEGG RRWWIAPRTS QGPSSSVKDR LVQAIKGLNE AVQDKDFLIQ  180
IWVPIQQEGK NFLTTLEQPH FFNPKYLSLK RYRDVSVAYN FLADEGSKES VGLPGRVFLG  240
KLPEWTPDVR FFRSEEYPRI KEAQKCDVRG SLALPVFERG SGTCLGVVEI VTTTQKMNYR  300
PELENICKAL EAVNLRSSAN LKSPSIEFPE VYNQFYYAAL PEVSDFLTSV CRSYDLPLAL  360
TWAPCARQGK GGSRHSDENF SECVSTIDPA CFVLDKQSHN FLEACSEHHL LQGEGIVGKA  420
FKAIKLFFVP EVTTFSKTNY PLAHHAKISG LHAALAVPLK SKFNGSVEFV LEFFFPKACL  480
DTEAQQEMLK SLSVTLQQDF RSFNLVIDKE LELEVVFPVR EEVLFSEDPL VDAETGENLK  540
PLPLEEISQE DSSWISHMIK ANEKGKGVSL SWEYQKEEPK EEFMLTSGWD NNQIGRGHSS  600
FLSDAEQFQK ASNSGLRLDI DQSFESASFG VGQPLLGSRR PGEKRRTKTE KTIGLEVLRQ  660
YFAGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKIKKV GHSLKKLQLV IDSVQGVQGS  720
IQLDSFYTSF PELSSPNISG TGTSFKNNDQ STNLDAQTEN GVSAQGIAAA PRSPPSSSCS  780
HSSGSSTCCS TGANQSTNTA NTVTTLMAEN ASAILKRARS EVRLHTVNQE GTKSISRTLS  840
HKTFSEHPFF ENLPRLPESR SRILKAGGAS KVKATFGEAK VRFTLLPTWG FRELQQEIAR  900
RFNIDNNIAT FDLKYLDDDK EWVLLTCEAD LEECIDIYRL SQSRTIKISV HEASQFRLGG  960
SFGSTGPGPG PGPGPSI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g33050

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL022604	0.0	AL022604.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project).
GenBank	AL161587	0.0	AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006412126.1	0.0	protein NLP2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	V4MB36	0.0	V4MB36_EUTSA; Uncharacterized protein
STRING	XP_006412126.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein