PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g32810

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bZIP

Protein Properties

Length: 264aa MW: 28992.1 Da PI: 6.0375

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g32810	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.4	3e-08	93	139	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 + e+r NReA r++R++Kka+ + Le++v L a N++L k+l++ Tp7g32810 93 RGEKRPLGNREAVRKYREKKKAKAALLEDEVSRLRAVNQQLLKRLQS 139 45899999**********************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.4E-12	87	157	No hit	No description
SMART	SM00338	4.5E-9	89	156	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	6.8E-14	90	146	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.783	91	138	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.27E-6	94	140	No hit	No description
CDD	cd14686	9.25E-12	95	148	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MEDGEIDFST NQEVFSSSDM GELPPSNCSI DSFFDGLLMD SHHAACTHTH TCNPTGPENT 60 HTHTCYHVHT KILPEDSDEK VSTDDTAESS EKRGEKRPLG NREAVRKYRE KKKAKAALLE 120 DEVSRLRAVN QQLLKRLQSQ ATLEAENARL KCLLVDLRGR IEGEIGAFPY QKPLPANIPS 180 FSHMMNPCNV HCEDETYCLQ DGFGGNNSQE GASINDQGLG GCEFDQLQCM ANHNLGGHAN 240 GSLSNANASI SNKRKGGHRA PRAV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g32810

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024005704.1	1e-171	basic leucine zipper 19
Swissprot	Q8VY76	1e-158	BZP19_ARATH; Basic leucine zipper 19
TrEMBL	V4MLL2	1e-169	V4MLL2_EUTSA; Uncharacterized protein
STRING	XP_006412160.1	1e-170	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2036	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35040.1	1e-133	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Henriques AR,Farias DDR,Costa de Oliveira A Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals. Genet. Mol. Res., 2017. [PMID:28671251] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]