PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g30500
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 995aa    MW: 110209 Da    PI: 6.3487
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g30500genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.8e-183581148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
        Tp7g30500 35 KGQWTPEEDEVLCKAVERFQGKNWKKIAECFK-DRTDVQCLHRWQKVL 81
                     799****************************9.************986 PP
2Myb_DNA-binding60.24.3e-1987133148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEd  ++ +v+++G++ W+tI+++++ gR +kqc++rw+++l
        Tp7g30500  87 KGPWSKEEDNTIIALVEKYGPKKWSTISQHLP-GRIGKQCRERWHNHL 133
                      79******************************.*************97 PP
3Myb_DNA-binding52.98.6e-17139181145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eE++ l++a++ +G++ W+  ++ ++ gR+++++k++w+
        Tp7g30500 139 KNAWTQEEELTLIRAHQIYGNK-WAELMKFLP-GRSDNSIKNHWN 181
                      689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5233081IPR017930Myb domain
SMARTSM007171.3E-143483IPR001005SANT/Myb domain
PfamPF002495.4E-153581IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-223693IPR009057Homeodomain-like
SuperFamilySSF466891.58E-153691IPR009057Homeodomain-like
CDDcd001671.83E-133881No hitNo description
PROSITE profilePS5129432.59682137IPR017930Myb domain
SuperFamilySSF466895.24E-3184180IPR009057Homeodomain-like
SMARTSM007172.5E-1886135IPR001005SANT/Myb domain
PfamPF002498.5E-1887133IPR001005SANT/Myb domain
CDDcd001674.27E-1689133No hitNo description
Gene3DG3DSA:1.10.10.608.2E-2794140IPR009057Homeodomain-like
SMARTSM007176.2E-15138186IPR001005SANT/Myb domain
PROSITE profilePS5129418.286138188IPR017930Myb domain
PfamPF002491.3E-14139182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-21141188IPR009057Homeodomain-like
CDDcd001672.67E-11141181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 995 aa     Download sequence    Send to blast
MKREMKAPNI PEEDFQGNKQ GKHGRTCGPA RRSTKGQWTP EEDEVLCKAV ERFQGKNWKK  60
IAECFKDRTD VQCLHRWQKV LNPELVKGPW SKEEDNTIIA LVEKYGPKKW STISQHLPGR  120
IGKQCRERWH NHLNPGINKN AWTQEEELTL IRAHQIYGNK WAELMKFLPG RSDNSIKNHW  180
NSSVKKKLES YYASGLLDQC QSSPLIALQN RSIASSSSWM HSNGDEGNFR QGADAEESEC  240
SQASTVFSCS QSTNDLLDEV KPANEEFYIP ELPSGTEQQI SNSPSHAESY YPSFEDVKIV  300
VPEISCEAVT SKKYQNHNCS TEVRTTTATE DHLQGVSNNA KQDLDLDCPQ LLTHNMDGDR  360
KNEACQAFQN SVRLSDQPSL PNSDTGIHPL PQTLITDEEC CRVLFPNTMK DIGTSSGERG  420
QNMVDPQKGK GSLCSSSAET HAHEIGNIPA LSSHPSNSEG LARHNSMPLL YSAVKDPLLL  480
GNDSVQGSHL LGATVLERKT DTDDGFIVTD GHVTSHGVDD NDAIPEQQEL SYVPKDSLKL  540
VPLNNFSSPS RVTKIYFPID DKPAEKDKGS LCYEPPRFSS ADIPFFSCDL VPSNSDLRQE  600
YSPFGIRQLM MSSMNCTTPL RLWDSPCHDK TPDVMLKDAA KSFSGAPSIL KKRHRDFLSP  660
VLDRRKEKML KSAEASSLAK DFSRLDVMLH DGDNCNSSRL SECHDNKSKC ASPSVTKEDL  720
KKTLESGGVT SMTNEKGCND DVASAKIDQE TRRSLVYHND AEMQLSSPDK TGSRPDNKVN  780
TIAKDPWNQH EKSLGTIPTG EISSEPPFTA DSIPLSASAG INTNIAQSSV IENFGICVGS  840
ISFSRFDGTP YKKLLDTPSP WKSASLFGSI SQSPKLPPEI SFENIGCFMS PGERSYDAIG  900
LMKHLSEHTA TAYADALEVL GNDTPETILK KRQLNKSIKG KENQHWPHDQ LENRSQVERR  960
ALDFSDCGTP GKAKVSSASP GGYSSPSSYL LKSCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-66351886159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-66351886159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g30500
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412436.20.0transcription factor MYB3R-1
SwissprotQ9S7G70.0MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLV4MBV40.0V4MBV4_EUTSA; Uncharacterized protein
STRINGXP_006412436.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46742649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]