PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g29740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ARR-B | ||||||||
Protein Properties | Length: 545aa MW: 61422.4 Da PI: 6.4732 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 83.4 | 2.4e-26 | 186 | 239 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+ Wt eLH++F+ av++L G ekA+Pk+il+lm+v+ Lt+e+v+SHLQk+R+ Tp7g29740 186 KPRVLWTRELHNKFLAAVDHL-GVEKAVPKKILDLMNVDKLTRENVASHLQKFRS 239 79*******************.********************************7 PP | |||||||
2 | Response_reg | 86 | 1.1e-28 | 13 | 121 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+++ +++l+++l + +y +v+++d+++ al+ll+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++++++ + +k Ga Tp7g29740 13 VLAVDDDQTCLRILETLLHRCQY-HVTTTDQAQTALQLLRENKnkFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSAHSDPKYVMKGVKHGAC 107 799********************.***************888888*******************87754.558************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ eel + Tp7g29740 108 DYLLKPVRVEELKN 121 ***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 3.1E-161 | 1 | 545 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 8.11E-36 | 10 | 130 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.3E-43 | 10 | 134 | No hit | No description |
SMART | SM00448 | 4.7E-33 | 11 | 123 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.134 | 12 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 7.4E-26 | 13 | 121 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.11E-28 | 14 | 126 | No hit | No description |
PROSITE profile | PS51294 | 14.382 | 183 | 242 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-27 | 183 | 244 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.15E-19 | 184 | 243 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.9E-25 | 186 | 239 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MTVVDQFPVG MRVLAVDDDQ TCLRILETLL HRCQYHVTTT DQAQTALQLL RENKNKFDLV 60 ISDVDMPDMD GFKLLELVGL EMDLPVIMLS AHSDPKYVMK GVKHGACDYL LKPVRVEELK 120 NIWQHVVRKS KFKKMKSSLS NGESEGNSDQ NGVKANRKRK DQFEEEEEEE EEERGNENDD 180 PTAQKKPRVL WTRELHNKFL AAVDHLGVEK AVPKKILDLM NVDKLTRENV ASHLQKFRSA 240 LKKITNEANQ QANMAAIDSH YMQMSSLKGL GGFHHHHPPI PLGSGQFQGG AATMRHYPSN 300 RTLGRLNSLA GMFPHVSSSL PRNHNDGGYI LQGMPIPPLE ELPINVNNNN HNKAFPSFTT 360 QQGSLMVAPN NHLVLEGHQQ SSSNPGFSPR FEINKRLEDW SNTVLPTNIP QSDVHSKPDA 420 LEWNLFCDSA IPLRNPNLDT NRTSFCRDTD LGFPNAAQAD FLNPLQMKQQ PANRSNPTVA 480 QLFRSSKPKE GLFMEQQKLE SGFMASDADS LDDIVNFMMT QEQSQPEFLE GDLGFGWHSS 540 VRTCI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-33 | 182 | 245 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. {ECO:0000269|PubMed:11574878}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00072 | SELEX | Transfer from AT4G31920 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g29740 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353533 | 0.0 | AK353533.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-C17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006412536.2 | 0.0 | LOW QUALITY PROTEIN: two-component response regulator ARR10 | ||||
Swissprot | O49397 | 0.0 | ARR10_ARATH; Two-component response regulator ARR10 | ||||
TrEMBL | V4MC70 | 0.0 | V4MC70_EUTSA; Two-component response regulator | ||||
STRING | XP_006412536.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1981 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31920.1 | 0.0 | response regulator 10 |