PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g29490
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 494aa    MW: 56189.9 Da    PI: 7.9175
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g29490genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.48.7e-211496193
               EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
               ff+ l+ps+ +    l +p kf++eh +g k+e+kt+tl++  s ++W++k+  ++++    lt+GWkeFv+a++L++gDfvvF+++g++ f  +
  Tp7g29490 14 FFQPLLPSSQSH---LNIPVKFFSEHiEG-KHEGKTVTLRSdASEKTWKLKM--EGQR----LTEGWKEFVEAHDLRVGDFVVFRHEGDMLF--R 96
               667776666555...56*********644.56789*****97889*******..8877....***********************9998777..3 PP
2B3642.4e-20151245299
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                f++++++++++++   +p  fa+++g++k +s++++l++e+   W  +l+ r  s+r+v+ +GW +F+ an+L++gD+++Fkl + + +++v++++++
  Tp7g29490 151 FSQFVTASNMSRDTAGVPSAFAKRNGLDK-GSQEIVLMNEEEIAWPSQLK-RLVSCRIVIVGGWTSFCIANKLEVGDSCTFKLLE-NAKTPVFQLCSR 245
                68999*********************997.668****************4.777889*************************988.67779****997 PP
3B344.52.8e-142813621799
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 lp +f++ ++++k+e  +++l d++g +W+++l+++ +sg   ++ ++GWk+F+  n++ +g++++++l++  + ++++k+++k
  Tp7g29490 281 HLPVSFTRVNELIKPE--KIVLVDKNGDEWSMELKVDSRSGLmyIMSGNGWKSFCGVNEVGAGESLTLELIR-GGVSPFLKFCSK 362
                69*********99766..8***************775555546566679*********************98.777789999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-277105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-259109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.04311103IPR003340B3 DNA binding domain
CDDcd100175.44E-211298No hitNo description
PfamPF023623.6E-151495IPR003340B3 DNA binding domain
SMARTSM010193.6E-2714103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-19143244IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-19144243IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.352150246IPR003340B3 DNA binding domain
CDDcd100172.41E-17150244No hitNo description
PfamPF023627.7E-20151245IPR003340B3 DNA binding domain
SMARTSM010195.8E-22151246IPR003340B3 DNA binding domain
CDDcd100173.68E-14269361No hitNo description
SMARTSM010192.5E-20270363IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-14273362IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-15273365IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-13281362IPR003340B3 DNA binding domain
PROSITE profilePS5086311.73282362IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MANASLFSPA NPHFFQPLLP SSQSHLNIPV KFFSEHIEGK HEGKTVTLRS DASEKTWKLK  60
MEGQRLTEGW KEFVEAHDLR VGDFVVFRHE GDMLFRVTAL GPSCCEIQYA PSGSRDQDKE  120
ENDEIERSDK EVEKILPTGK FSHSSSDLTC FSQFVTASNM SRDTAGVPSA FAKRNGLDKG  180
SQEIVLMNEE EIAWPSQLKR LVSCRIVIVG GWTSFCIANK LEVGDSCTFK LLENAKTPVF  240
QLCSRTKTER KKETLSAEDN ISERTDENRF VKLTPTLRKQ HLPVSFTRVN ELIKPEKIVL  300
VDKNGDEWSM ELKVDSRSGL MYIMSGNGWK SFCGVNEVGA GESLTLELIR GGVSPFLKFC  360
SKMEQSPIEA EAGAHKRPRD KKWSQETRPE LEIREKTAEE GEPSHRSRAS NKTNANQGNL  420
HKKLHSSIPD QMTKVKHSVL WTLTNIRRTR KELETMQQKL EDSLQDINNL VLVFILLYFL  480
TVPCCHTERR RQRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g29490
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467816.10.0PREDICTED: B3 domain-containing protein REM8-like
SwissprotQ8H2D10.0REM8_ARATH; B3 domain-containing protein REM8
TrEMBLV4MMK30.0V4MMK3_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006412570.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]