PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g29130
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Trihelix
Protein Properties Length: 258aa    MW: 29370.8 Da    PI: 4.3767
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g29130genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.42.9e-111995278
   trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78
               Wt +  l L++    +e + +++ +  ++W  +s+++ +  ++r+ +qC+ kw++l  +y  ik++e++ +   +s 
  Tp7g29130 19 WTVKDCLILVNEIAAVEADCSNALSSFQKWTMISENCNALDVRRTLNQCRRKWDSLVSDYGHIKQWESQDRGIGHSY 95
               99999999999999*****************************************************9875544445 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-81889No hitNo description
PROSITE profilePS500906.471975IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEEGTSGLRR TRSQVAPDWT VKDCLILVNE IAAVEADCSN ALSSFQKWTM ISENCNALDV  60
RRTLNQCRRK WDSLVSDYGH IKQWESQDRG IGHSYWSLST DKRKKLNLPV NVDNELYEAI  120
NAVLMIQEDK AGTEPDTDSD PEAQEGFNVL DVTAELATQQ NKTMQEKKQA EEISTDEEEE  180
ETMNIEEEVK VLEAKLGEKA DLIHAIVRRN LAKGSERGDD ISIDDKMKFV RQQGDELIVC  240
LSEIVDTLNR LRRVPQEI
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g29130
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412613.11e-148trihelix transcription factor ASR3
RefseqXP_024005449.11e-148trihelix transcription factor ASR3
RefseqXP_024005450.11e-148trihelix transcription factor ASR3
RefseqXP_024005452.11e-148trihelix transcription factor ASR3
RefseqXP_024005453.11e-148trihelix transcription factor ASR3
TrEMBLV4P3R91e-147V4P3R9_EUTSA; Uncharacterized protein
STRINGXP_006412613.11e-148(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121542328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-120sequence-specific DNA binding transcription factors