PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp7g27740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 265aa MW: 30678.6 Da PI: 4.593 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.1 | 2.4e-11 | 57 | 99 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr+++P+ + Kl+Ka++ + ++Y+++L Tp7g27740 57 VSERNRRQKLNQRLFALRSVVPNiS------KLDKASVIKDSIDYMQEL 99 57*********************66......***************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.929 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.25E-10 | 54 | 99 | No hit | No description |
SuperFamily | SSF47459 | 2.75E-16 | 54 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-12 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-16 | 56 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.4E-9 | 57 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 265 aa Download sequence Send to blast |
MEDLDDEYKN YWETTMFFQN QEFEFDSWPL EEAFSGSGEW SSPDGAATSP ASAKNVVSER 60 NRRQKLNQRL FALRSVVPNI SKLDKASVIK DSIDYMQELI DQEKRLEAEI RELESQSTLL 120 ENPTKDYDCI KNFLENQQQN LSDINLIMRS KKFRHMDYNT FGSSIPKVHN NHSLIEVLEM 180 KVTWMGEKTV VVCITCSKRR ETMLQLCKVL ESLNLNILTT NFSCFSSRLS TTLFLQADED 240 ERTTVETKIQ TAIAAYNDPS CLIDF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-13 | 55 | 116 | 9 | 70 | Transcription factor MYC2 |
5gnj_B | 6e-13 | 55 | 116 | 9 | 70 | Transcription factor MYC2 |
5gnj_E | 6e-13 | 55 | 116 | 9 | 70 | Transcription factor MYC2 |
5gnj_F | 6e-13 | 55 | 116 | 9 | 70 | Transcription factor MYC2 |
5gnj_G | 6e-13 | 55 | 116 | 9 | 70 | Transcription factor MYC2 |
5gnj_I | 6e-13 | 55 | 116 | 9 | 70 | Transcription factor MYC2 |
5gnj_M | 6e-13 | 55 | 116 | 9 | 70 | Transcription factor MYC2 |
5gnj_N | 6e-13 | 55 | 116 | 9 | 70 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp7g27740 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ630482 | 1e-133 | AJ630482.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At4g29930. | |||
GenBank | AK117730 | 1e-133 | AK117730.1 Arabidopsis thaliana At4g29930 mRNA for putative bHLH transcription factor (bHLH027), complete cds, clone: RAFL17-41-A21. | |||
GenBank | AK176201 | 1e-133 | AK176201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-07-N06. | |||
GenBank | AK176276 | 1e-133 | AK176276.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL23-19-M11. | |||
GenBank | AK228201 | 1e-133 | AK228201.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH027) - like protein, complete cds, clone: RAFL14-65-D05. | |||
GenBank | BT005869 | 1e-133 | BT005869.1 Arabidopsis thaliana At4g29930 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006412786.2 | 1e-172 | transcription factor bHLH27 | ||||
Swissprot | Q700E3 | 1e-135 | BH027_ARATH; Transcription factor bHLH27 | ||||
TrEMBL | A0A1J3EJ61 | 1e-168 | A0A1J3EJ61_NOCCA; Transcription factor bHLH27 (Fragment) | ||||
TrEMBL | A0A1J3GQB3 | 1e-168 | A0A1J3GQB3_NOCCA; Transcription factor bHLH27 (Fragment) | ||||
STRING | Bo1g014720.1 | 1e-162 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12841 | 18 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29930.1 | 1e-156 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|