PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g27030

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 406aa MW: 44506.3 Da PI: 6.451

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g27030	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.6	0.00054	267	302	15	55
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +++ L +l+ + +K + a++L +A+ YI+ Lq Tp7g27030 267 KLGGRIAALHQLVSPF-----GKTDTASVLSEAIGYIRFLQ 302 5556788888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.299	252	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.42E-5	262	306	No hit	No description
SuperFamily	SSF47459	5.89E-10	262	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-7	267	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MNRGVLESSP VQQLMAAGNP NWWNVSGGMR PPPPLMGHQQ APSSPQMTPN NDYLRPRMMP 60 TLLPHFLPYP ATSSSSSSSP SLPNNPNLSS WLESNDLPPE SWSLSQLLLG GLMMGEEERL 120 EIMNHHNHHG EQQQQHNFQG KMRLENWEEQ VLSHQQASMG VVDIKQESNI NNSNGYLISS 180 PNSPPNKSCV TTTTTTSLNS NDDNNNNNSM LDFSSNHNGL NLSEGRHTPP DRSSECNSLD 240 IGGSTNKKPR LQPSPSSQST LKVRKEKLGG RIAALHQLVS PFGKTDTASV LSEAIGYIRF 300 LQSQIEALSH PYFGTTASGN MRHQQHLQGD RSCLFPEDPG QLVNDQCIKR IGASSSSTDN 360 QNENEEPKKD LRSRGLCLVP ISCTLQVGND NGADYWAPAL GSAGFH

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MNRGVLESSP VQQLMAAGNP NWWNVSGGMR PPPPLMGHQQ APSSPQMTPN NDYLRPRMMP  60
TLLPHFLPYP ATSSSSSSSP SLPNNPNLSS WLESNDLPPE SWSLSQLLLG GLMMGEEERL  120
EIMNHHNHHG EQQQQHNFQG KMRLENWEEQ VLSHQQASMG VVDIKQESNI NNSNGYLISS  180
PNSPPNKSCV TTTTTTSLNS NDDNNNNNSM LDFSSNHNGL NLSEGRHTPP DRSSECNSLD  240
IGGSTNKKPR LQPSPSSQST LKVRKEKLGG RIAALHQLVS PFGKTDTASV LSEAIGYIRF  300
LQSQIEALSH PYFGTTASGN MRHQQHLQGD RSCLFPEDPG QLVNDQCIKR IGASSSSTDN  360
QNENEEPKKD LRSRGLCLVP ISCTLQVGND NGADYWAPAL GSAGFH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g27030

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488634	0.0	AF488634.2 Arabidopsis thaliana clone bHLH068 putative bHLH transcription factor mRNA, complete cds.
GenBank	AY081316	0.0	AY081316.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.
GenBank	BT000121	0.0	BT000121.1 Arabidopsis thaliana putative protein (At4g29100) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010447890.1	0.0	PREDICTED: transcription factor bHLH68 isoform X1
Swissprot	Q8S3D1	0.0	BH068_ARATH; Transcription factor bHLH68
TrEMBL	M4D3M9	0.0	M4D3M9_BRARP; Uncharacterized protein
STRING	XP_010447890.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1872	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]