PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g26510
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 342aa    MW: 39339.8 Da    PI: 6.0385
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g26510genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.75.7e-50101521129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                lppGfrFhP+deelv++yL++k+++k+           +          + e+d++ +ePw+Lp  +k + kewyfFs rd+kyatg r+nrat sgyWk
  Tp7g26510  10 LPPGFRFHPSDEELVCHYLCNKIRTKSdhgdvedD---DvdealkgatDLVEIDLHICEPWQLPDVAKLNAKEWYFFSFRDRKYATGYRTNRATISGYWK 106
                79***********************9976655441...1566667764699*************87788999**************************** PP

        NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                atgkd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  Tp7g26510 107 ATGKDRTVMDPrTSQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152
                **********967888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-568170IPR003441NAC domain
PROSITE profilePS5100553.58910170IPR003441NAC domain
PfamPF023651.5E-2611151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGLKDIGSKL PPGFRFHPSD EELVCHYLCN KIRTKSDHGD VEDDDVDEAL KGATDLVEID  60
LHICEPWQLP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT ISGYWKATGK DRTVMDPRTS  120
QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNMPPKE DWVLCRVFNK GRDSSIQDNN  180
SNNDHQTQRF EIDDTPDLNY APNYNNQLQP LLSSPPSTTI DPPHHNDHWE QLMKQPSRTT  240
HHPYHHHCQH HTIACGWEQM MIGSMSSSSS HGPDHESLLN LLYAENNNSV NITDVHYDQN  300
YDKIFLSSDI TSLDHDKTCM GSSFDGGMVS DLHMECGGPL EF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-441017017165NO APICAL MERISTEM PROTEIN
1ut4_B2e-441017017165NO APICAL MERISTEM PROTEIN
1ut7_A2e-441017017165NO APICAL MERISTEM PROTEIN
1ut7_B2e-441017017165NO APICAL MERISTEM PROTEIN
4dul_A2e-441017017165NAC domain-containing protein 19
4dul_B2e-441017017165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g26510
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382740.0KF738274.1 Brassica napus NAC transcription factor 74-2 (NAC74-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001303022.10.0protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ84TE63e-59NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0A7DNN50.0A0A0A7DNN5_BRANA; NAC transcription factor 74-2
TrEMBLA0A397L7880.0A0A397L788_BRACM; Uncharacterized protein
STRINGBra024194.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.10.0NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]