PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g26090
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 296aa    MW: 33608.5 Da    PI: 6.2563
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g26090genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-18144193255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr++  +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+g
  Tp7g26090 144 LYRGVRQRQ-WGKWVAEIRKPRS---RARLWLGTFDTAEEAAMAYDRQAFKLRG 193
                59****999.**********954...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.41E-35143203No hitNo description
PROSITE profilePS5103223.762144201IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-23144202IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.9E-32144202IPR001471AP2/ERF domain
SMARTSM003805.4E-39144207IPR001471AP2/ERF domain
PfamPF008474.3E-13145193IPR001471AP2/ERF domain
PRINTSPR003672.7E-11145156IPR001471AP2/ERF domain
PRINTSPR003672.7E-11167183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDFDEELNLC ITKGKNIDPS FGEPSSTTSP RSIKKMRNPD HRPKPYFPFS SSSSYSLAAA  60
FPFSLDPMIQ NQQHEQQLGY VPVNQQHDPI VQDQKQMISF SPQQPQQQQQ YMVKYWSDTL  120
NLSPRGRMMM MNQESVPPNS ATKLYRGVRQ RQWGKWVAEI RKPRSRARLW LGTFDTAEEA  180
AMAYDRQAFK LRGQNATLNF PEHFVNKEIE LHDSTGASIS LHKKQSETPQ PNEVNLESKE  240
AAVSDSGVDE GMAEAWFNAV TAGWGPESPL WDDLDSTQFS QSSSSSSASC PMRPFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21143201160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-21143201463ATERF1
3gcc_A2e-21143201463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13343KKMRNPDHRPK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g26090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144196.11e-159PREDICTED: ethylene-responsive transcription factor ERF054-like
RefseqXP_013673941.11e-159ethylene-responsive transcription factor ERF054-like
SwissprotQ9M0J31e-145ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLA0A398AQ551e-159A0A398AQ55_BRACM; Uncharacterized protein
STRINGBra026280.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.11e-132ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]