PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g25910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 336aa MW: 37851.1 Da PI: 4.4378 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.3 | 3.9e-18 | 119 | 168 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp + r+r++lg+f taeeAa +++a+ +l+g Tp7g25910 119 KFRGVRRRP-WGKYAAEIRDPEQ---RRRIWLGTFSTAEEAAVVYDNAAIRLRG 168 89*******.**********743...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 9.8E-29 | 118 | 176 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-39 | 119 | 182 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.893 | 119 | 176 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.32E-32 | 119 | 175 | No hit | No description |
Pfam | PF00847 | 1.7E-10 | 119 | 168 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-20 | 119 | 176 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.4E-9 | 120 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-9 | 142 | 158 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MMMDEYMDFR PVKNTEHKTV IKKYTKKLPA ENKKKISTGR NSTRLVRVCV MDCDATDSSS 60 DEEEFLLPRR RVKRLINEIR VEPSSSAEVS APIKNGETLT VDSSPTKVSV PGADQNHRKF 120 RGVRRRPWGK YAAEIRDPEQ RRRIWLGTFS TAEEAAVVYD NAAIRLRGPD ALTNFTVPPE 180 PVPEPEPESN ISVSSTSESM DDSQHHVSSP TSVLNYQISE PISEPVKPVK QEFLEPEPIS 240 WHLGEGEGNG NTNTDDSFPL DIPFLDSYFS ESLPDISIFD QSMSPIQSFE NDFLNELMLF 300 DNSNNVEGEN YSSDIKEIGS IFNDLDDSLI SDLLVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-21 | 118 | 175 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 5e-21 | 118 | 175 | 4 | 62 | ATERF1 |
3gcc_A | 5e-21 | 118 | 175 | 4 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g25910 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018448151.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4 | ||||
Swissprot | Q9SUE3 | 1e-162 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A078FPK0 | 1e-172 | A0A078FPK0_BRANA; BnaA08g13940D protein | ||||
TrEMBL | A0A3P6BUE5 | 1e-172 | A0A3P6BUE5_BRACM; Uncharacterized protein | ||||
STRING | XP_006413010.1 | 1e-171 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2229 | 25 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-134 | cytokinin response factor 4 |
Publications ? help Back to Top | |||
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