PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g25910
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 336aa    MW: 37851.1 Da    PI: 4.4378
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g25910genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-18119168255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +++GVr+++ +g+++AeIrdp +   r+r++lg+f taeeAa  +++a+ +l+g
  Tp7g25910 119 KFRGVRRRP-WGKYAAEIRDPEQ---RRRIWLGTFSTAEEAAVVYDNAAIRLRG 168
                89*******.**********743...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.8E-29118176IPR001471AP2/ERF domain
SMARTSM003804.7E-39119182IPR001471AP2/ERF domain
PROSITE profilePS5103222.893119176IPR001471AP2/ERF domain
CDDcd000185.32E-32119175No hitNo description
PfamPF008471.7E-10119168IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-20119176IPR016177DNA-binding domain
PRINTSPR003672.4E-9120131IPR001471AP2/ERF domain
PRINTSPR003672.4E-9142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MMMDEYMDFR PVKNTEHKTV IKKYTKKLPA ENKKKISTGR NSTRLVRVCV MDCDATDSSS  60
DEEEFLLPRR RVKRLINEIR VEPSSSAEVS APIKNGETLT VDSSPTKVSV PGADQNHRKF  120
RGVRRRPWGK YAAEIRDPEQ RRRIWLGTFS TAEEAAVVYD NAAIRLRGPD ALTNFTVPPE  180
PVPEPEPESN ISVSSTSESM DDSQHHVSSP TSVLNYQISE PISEPVKPVK QEFLEPEPIS  240
WHLGEGEGNG NTNTDDSFPL DIPFLDSYFS ESLPDISIFD QSMSPIQSFE NDFLNELMLF  300
DNSNNVEGEN YSSDIKEIGS IFNDLDDSLI SDLLVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21118175159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-21118175462ATERF1
3gcc_A5e-21118175462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g25910
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448151.10.0PREDICTED: ethylene-responsive transcription factor CRF4
SwissprotQ9SUE31e-162CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLA0A078FPK01e-172A0A078FPK0_BRANA; BnaA08g13940D protein
TrEMBLA0A3P6BUE51e-172A0A3P6BUE5_BRACM; Uncharacterized protein
STRINGXP_006413010.11e-171(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-134cytokinin response factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]