PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g23640
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 593aa    MW: 66791.2 Da    PI: 9.2552
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g23640genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.7e-066283223
               EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
               kC++C++ F ++ n++rHir+H
  Tp7g23640 62 KCEKCTREFCSPVNYRRHIRMH 83
               7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.8686188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MELVKQDGND SLDMLIRRAV GKDPFLSFPR PENSPVQLFQ LLHTLERPGW PLLTPLKIQM  60
QKCEKCTREF CSPVNYRRHI RMHRRLRKPE KDSGKERDAL GAFWNKISVV DAKEILSLKS  120
MMLENVPGES VESGLMSLIE KPGYTALPQY YLRAGSDLLD IIQARPPRFP ISSQELFSIL  180
DDASEKTFLC NEAAPMQKYI FDGENGKTVL DAKNVVACAS FLLEQRLIEA WLADKDAKAL  240
RCQNLLVEEE EAARRRQAEL LEKKKRKKLR QKEQRVKDQK KDAKEDESTT SEEQQSPAES  300
SSSLSVASDS EAQRSDSIPI EDSSSLEEPQ VLEMDNGRNG ETQAPMFDDD GYDNGQNMER  360
RSGRRHMEKR SQHGIPNGFH GNHAPKLGGI RKNGTNRDAR ANTTKVWSRK ANNQKSISVD  420
ASITEQDQTK KSEVLIGSVS VTIRNSCLSG EHNQTKCSEE VGRTKIVEAK STSEQSTVKV  480
WRPVSSQGRK VSTVEENADK EDKKNSSSTA PEVKTAHHIS LQFNNQEAKA FLAKRWKEAT  540
SAEHVTLVLS QETDMSGNST HESSNGVTAS RPKSRMKPEK GTKVKYVPKQ RIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253267RRRQAELLEKKKRKK
2261268EKKKRKKL
3263267KKRKK
4266276KKLRQKEQRVK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g23640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413290.10.0uncharacterized protein LOC18029908
RefseqXP_024004636.10.0uncharacterized protein LOC18029908
TrEMBLV4MP250.0V4MP25_EUTSA; Uncharacterized protein
STRINGXP_006413290.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.10.0C2H2-like zinc finger protein