PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g23590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB | ||||||||
Protein Properties | Length: 283aa MW: 32405.9 Da PI: 8.6904 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.5 | 3.7e-14 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+ + +G +W+t++ + g+ R +k+c++rw +yl Tp7g23590 17 KGFWSPEEDEKLKSFILSHGHSCWTTVPIKAGLQRNGKSCRLRWINYL 64 688*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.5 | 8.4e-15 | 74 | 115 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +eE+e+++ + lG++ W++Ia++++ gRt++++k++w+++l Tp7g23590 74 NAEEEEIILTFHSSLGNK-WSRIAKYLP-GRTDNEIKNYWHSHL 115 68****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.261 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.86E-27 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.2E-10 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-11 | 18 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-20 | 20 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.05E-8 | 20 | 64 | No hit | No description |
PROSITE profile | PS51294 | 22.548 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-23 | 72 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.16E-10 | 74 | 115 | No hit | No description |
Pfam | PF00249 | 6.9E-13 | 75 | 115 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MGKTTKSGER PKQRHRKGFW SPEEDEKLKS FILSHGHSCW TTVPIKAGLQ RNGKSCRLRW 60 INYLRPGLKR DVINAEEEEI ILTFHSSLGN KWSRIAKYLP GRTDNEIKNY WHSHLKKKWL 120 ESQHATSIST SSESLVACGK RKPKPLISNH VISFQTLPEK TSSPASQESN GNNNNYPCSS 180 GPEIPRLFFS GWFSSSHPNF DYSSDLTDSK HNRAPNIEGS VSDYEEVGDV DRFNYNDMMT 240 NNSNWSLDDV VFGSKRQKQE HKLDRDDSDC NSSDYFFSTS TTM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-23 | 17 | 118 | 7 | 107 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g23590 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009137536.1 | 1e-151 | PREDICTED: transcription factor LAF1-like | ||||
Swissprot | Q9M0K4 | 1e-147 | LAF1_ARATH; Transcription factor LAF1 | ||||
TrEMBL | M4DRL1 | 1e-149 | M4DRL1_BRARP; Uncharacterized protein | ||||
STRING | Bra019154.1-P | 1e-150 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 1e-149 | myb domain protein 18 |
Publications ? help Back to Top | |||
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