PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g22450
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GATA
Protein Properties Length: 309aa    MW: 33406.9 Da    PI: 6.2289
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g22450genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.74.3e-15215251135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cg ++  Tp++Rrgp+g++tLCnaCGl++  +g+
  Tp7g22450 215 CTHCGISSkcTPMMRRGPSGPRTLCNACGLFWTNRGT 251
                ******999************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.62479114IPR010399Tify domain
SMARTSM009792.8E-1479114IPR010399Tify domain
PfamPF062002.0E-1281113IPR010399Tify domain
PfamPF062033.8E-14147189IPR010402CCT domain
PROSITE profilePS5101711.905147189IPR010402CCT domain
SuperFamilySSF577161.43E-12208263No hitNo description
PROSITE profilePS5011410.686209265IPR000679Zinc finger, GATA-type
SMARTSM004017.7E-16209262IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.9E-15213256IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.64E-16214265No hitNo description
PfamPF003201.8E-12215251IPR000679Zinc finger, GATA-type
PROSITE patternPS003440215242IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MFGHHSQPEI NPNQIGSSSA TAGEDHVSAS ANSSGHIPYD DMDEIPHPDS IYAASDLIPD  60
GSQLVPHGSE GSELLGSRPP EGANQLTISF RGQVYVFDAV GPDKVDAVLS LLGGSTELSP  120
GPQGMELAQQ NHMPVVEYQN RYSHPQRAQS LDRFRKKRNA RCFEKKVRYG VRQEVALRMA  180
RNKGQFTSAK MPDGAYNSGT DQDSAQDNGH PEISCTHCGI SSKCTPMMRR GPSGPRTLCN  240
ACGLFWTNRG TLRDLSKKTE ENQMSIIKPA EVGSDADPNN SNSEPATVEE HTVLVSVANG  300
DKPNLLGNH
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g22450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0860380.0AY086038.1 Arabidopsis thaliana clone 20769 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138082.10.0PREDICTED: GATA transcription factor 25
RefseqXP_013739218.10.0GATA transcription factor 25-like
SwissprotQ9LRH60.0GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A078JAP60.0A0A078JAP6_BRANA; BnaA01g35150D protein
STRINGBo1g039000.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.20.0GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]