PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g22220
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 345aa    MW: 37685.4 Da    PI: 10.1087
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g22220genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30276333359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYeg+Hnh 
  Tp7g22220 276 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDAMMLIVTYEGDHNHA 333
                9*************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.1E-16238272IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-32262333IPR003657WRKY domain
PROSITE profilePS5081130.01269335IPR003657WRKY domain
SuperFamilySSF1182908.89E-26272333IPR003657WRKY domain
SMARTSM007745.4E-37274334IPR003657WRKY domain
PfamPF031063.3E-26276332IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAVELMMSSY GGVTVKGEDG GFSAKMEDTA LREAASAGIH GVEEFLKLIG QSQPTDENQT  60
EITAVTDVAV NSFKKVISLL GRSRTGHARF RRAPATTTKT EEDRGGDWKN EEKPGTTTTV  120
VLNRQKTEQY GGSAFRVYCP TPIHRRPPLS HNHSLTKNGS SSSAPILANG RPQEQPPSST  180
INFAPSPPVS ASNSFMSSHR CDTDSNQMSS GFEFTNPSSQ VSGSRGKPPL SSASLKRKCN  240
SSPSSRCHCT KKRKSRVKRV IRVPAVSSKM ADIPPDEYSW RKYGQKPIKG SPHPRGYYKC  300
SSVRGCPARK HVERALDDAM MLIVTYEGDH NHALVLETTH HDKAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21262334273WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235253KRKCNSSPSSRCHCTKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g22220
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137844.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX00.0WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1J3GNK40.0A0A1J3GNK4_NOCCA; Putative WRKY transcription factor 7
STRINGBo1g037740.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-180WRKY DNA-binding protein 7