PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g21990
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Nin-like
Protein Properties Length: 930aa    MW: 102529 Da    PI: 5.7665
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g21990genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.94.8e-29564614252
     RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                ek+isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++
  Tp7g21990 564 EKTISLDVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 614
                799**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF557812.85E-5187258IPR029016GAF domain-like
PROSITE profilePS5151917.757553634IPR003035RWP-RK domain
PfamPF020427.0E-26566614IPR003035RWP-RK domain
SuperFamilySSF542773.6E-23831919No hitNo description
PfamPF005641.7E-20834915IPR000270PB1 domain
SMARTSM006664.3E-28834916IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2403.1E-27834915No hitNo description
PROSITE profilePS5174527.42834916IPR000270PB1 domain
CDDcd064076.48E-35835915No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0010118Biological Processstomatal movement
GO:0010167Biological Processresponse to nitrate
GO:0042128Biological Processnitrate assimilation
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 930 aa     Download sequence    Send to blast
MDVDDLDLDG SWPLDQIPYL SSANRMISPI FVSSSSEQPC SPLWAFSDGG GTANHATAGC  60
DDEKISSASG VPSFRLADYP LLLPYSSPSV AENTTEKHNS FQFPSPLMSL VPPENVDNYC  120
VIKERMTQAL RYFKESTEQH VLAQVWAPVR KNGRNLLTTL GQPFVLNPNG NGLNQYRMIS  180
LTYMFSVDSE SDIELGLPGR VFRQKLPEWT PNVQYYSSKE FSRLDHALHY NVRGTLALPV  240
FNPSGESCIG VVELIMTSEK IHYAPEVDRV CKALEAVNLK SSEILDHQTT QICNESRQNA  300
LAEILEVLTV VCETHNLPLA QTWVPCQHGS VLANGGGLKK NCTSFDGSCM GQVCMSTTDM  360
ACYVVDAHVW GFRDACLEHH LQKGQGVAGR AFLNGGSCFC RDITKFCKTQ YPLVHYALMF  420
KLTTCFAISL QSSYTGDDSY ILEFFLPSSI TDDQEQDSLL GSLLVTMKEH FQSLRVASGV  480
DFGEDDDKLS FEIIQALPDK KIHSEIESIR VPFSGFKSSA SETRLIPQLA VQSSDPVNGK  540
INVATVNGVV KEKKKTEKKR GKTEKTISLD VLQQYFTGSL KDAAKSLGVC PTTMKRICRQ  600
HGISRWPSRK IKKVNRSITK LKRVIESVQG TDGGLDLTSM AVSSIPWTHG QTAAQPLNSP  660
SGSKMPELPN TNNSPNHWSS DHSPHEPNGS PELPSNGHKR SRTGDESAGT PTSHGSCDGN  720
QLDETKVPNQ DPLFTVGGSP GLFFPPYSRD HDVSAASFSM PNRLLGTIDH FRGMPIEDAG  780
SSKDLRNLCS SMAFEDKFPE SNWMNNDSNS MYAPPKEEAV ANITREPSGS EMRTVTIKAS  840
YKEDIIRFRI SSGSGIMELK DEVAKRLKLD AVTFDIKYLD DDNEWVLIAC DADLQECLEI  900
PRSSRTNIVR LLVHDLTSNL GSSCESTGEL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00449DAPTransfer from AT4G24020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g21990
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2284520.0AK228452.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL15-03-P13.
GenBankBT0057760.0BT005776.1 Arabidopsis thaliana clone RAFL15-03-P13 (R20174) unknown protein (At4g24020) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413484.10.0protein NLP7
RefseqXP_024005488.10.0protein NLP7
SwissprotQ84TH90.0NLP7_ARATH; Protein NLP7
TrEMBLV4MHY80.0V4MHY8_EUTSA; Uncharacterized protein
STRINGXP_006413484.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25072666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.10.0NIN like protein 7
Publications ? help Back to Top
  1. Xu N, et al.
    The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators.
    Plant Cell, 2016. 28(2): p. 485-504
    [PMID:26744214]
  2. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  3. Yu LH, et al.
    Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation.
    Sci Rep, 2016. 6: p. 27795
    [PMID:27293103]
  4. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]
  5. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]
  6. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  7. Liu KH, et al.
    Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks.
    Nature, 2017. 545(7654): p. 311-316
    [PMID:28489820]
  8. Li Z, et al.
    The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1.
    New Phytol., 2017. 216(4): p. 1205-1222
    [PMID:28850721]
  9. Cao H, et al.
    Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation.
    Front Plant Sci, 2017. 8: p. 1703
    [PMID:29051766]
  10. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]
  11. Karve RA,Iyer-Pascuzzi AS
    Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release.
    Plant Signal Behav, 2018. 13(1): p. e1414122
    [PMID:29215953]
  12. Zhao L, et al.
    The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium.
    Sci Rep, 2018. 8(1): p. 1487
    [PMID:29367694]