PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g21470

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

WRKY

Protein Properties

Length: 304aa MW: 33968.8 Da PI: 8.7885

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g21470	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97	1.2e-30	136	194	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ver+ ++p+ ++itY++eHnhe Tp7g21470 136 SDAWAWRKYGQKPIKGSPHPRSYYRCSSSkGCLARKQVERNPQNPEKFTITYTNEHNHE 194 7************************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.9E-31	121	196	IPR003657	WRKY domain
PROSITE profile	PS50811	32.753	130	196	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-26	130	196	IPR003657	WRKY domain
SMART	SM00774	2.3E-36	135	195	IPR003657	WRKY domain
Pfam	PF03106	1.1E-25	137	194	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MGEVAYMDEG DLEAIVRGYS GSGESSGGFS PSFCLPFETA SFYEPDSETT GLDELGELYK 60 PFYPFSTQTI LTSSVSVPED SSRSFRSDKK QRTHGCLLSN GSKVGHIRVP ESKSKKSKKN 120 QQKRVVEQVK EENLLSDAWA WRKYGQKPIK GSPHPRSYYR CSSSKGCLAR KQVERNPQNP 180 EKFTITYTNE HNHELPTRRN SLAGSTRAKS SQPKPFITKK TGKQMVSSPT SNRMITSADE 240 SSVAVHDMRV AEMSTYQTTR EIEGTSSKLP SDLLSGTGNF PVFTGDFDEL LVSQEFLNGY 300 LWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-20	126	196	8	77	Probable WRKY transcription factor 4
2lex_A	7e-20	126	196	8	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269\|PubMed:11875555}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00448	DAP	Transfer from AT4G23550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g21470

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced 30 minutes after flagellin treatment. {ECO:0000269\|PubMed:11875555}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU912400	0.0	EU912400.1 Brassica napus WRKY29-1 transcription factor (WRKY29-1) mRNA, complete cds.
GenBank	KF430046	0.0	KF430046.1 Brassica rapa WRKY transcription factor 29 (WRKY29) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010439158.1	0.0	PREDICTED: probable WRKY transcription factor 29
Swissprot	Q9SUS1	1e-177	WRK29_ARATH; Probable WRKY transcription factor 29
TrEMBL	A0A1J3E023	0.0	A0A1J3E023_NOCCA; Putative WRKY transcription factor 29
STRING	XP_010439158.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6090	25	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23550.1	1e-159	WRKY family protein

Publications ? help Back to Top
Zhou F, et al. High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression. Plant J., 2004. 39(6): p. 920-32 [PMID:15341634] Liu XQ, et al. OsWRKY03, a rice transcriptional activator that functions in defense signaling pathway upstream of OsNPR1. Cell Res., 2005. 15(8): p. 593-603 [PMID:16117849] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Yi SY,Shirasu K,Moon JS,Lee SG,Kwon SY The activated SA and JA signaling pathways have an influence on flg22-triggered oxidative burst and callose deposition. PLoS ONE, 2014. 9(2): p. e88951 [PMID:24586453] Cambiagno DA,Lonez C,Ruysschaert JM,Alvarez ME The synthetic cationic lipid diC14 activates a sector of the Arabidopsis defence network requiring endogenous signalling components. Mol. Plant Pathol., 2015. 16(9): p. 963-72 [PMID:25727690] Gkizi D, et al. The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae. Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23 [PMID:26780421] Li Y,Williams B,Dickman M Arabidopsis B-cell lymphoma2 (Bcl-2)-associated athanogene 7 (BAG7)-mediated heat tolerance requires translocation, sumoylation and binding to WRKY29. New Phytol., 2017. 214(2): p. 695-705 [PMID:28032645] Wang S, et al. Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22. Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322 [PMID:29090631]