PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g19920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 758aa MW: 83429 Da PI: 5.5317 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.4 | 2.9e-19 | 63 | 118 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe++F+++++p+ ++r+eL+++l+L+ qVk+WFqN+R+++k Tp7g19920 63 KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRELSLEPLQVKFWFQNKRTQMK 118 688999***********************************************998 PP | |||||||
2 | START | 216.6 | 8.5e-68 | 262 | 481 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 ela +a++el+++a+ ++p+Wv+s e++n++e+ ++f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW+ + +a tlev+s+g Tp7g19920 262 ELAVAAMEELLRMAQTGDPLWVSSDnsvEILNEEEYFRTFPRGIGpkpigMRSEASRESTVVIMNHINLVEILMDVN-QWSSVFCgivsRALTLEVLSTG 360 57899*******************9999**************999********************************.******99999*********** PP ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 galq+m+ae+q++splvp R+ +fvRy++q+++ +w++vdvS+ds ++ p ++R +++pSg+li++++ng+skvtwv+h+++++r++h ++ Tp7g19920 361 vagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHSDNTWAVVDVSLDSLRPSP----IIRNRRRPSGCLIQELQNGYSKVTWVDHTEVDDRSVHTMY 456 ******************************************************99....7*************************************** PP HHHHHHHHHHHHHHHHHHTXXXXXX CS START 182 rslvksglaegaktwvatlqrqcek 206 ++lv++gla+gak+wvatl+rqce+ Tp7g19920 457 KPLVNTGLAFGAKRWVATLDRQCER 481 ***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-22 | 44 | 118 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.59E-18 | 52 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.006 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-17 | 61 | 124 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.4E-17 | 63 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.62E-18 | 63 | 121 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 46.215 | 253 | 484 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.06E-35 | 255 | 483 | No hit | No description |
CDD | cd08875 | 3.93E-124 | 257 | 480 | No hit | No description |
SMART | SM00234 | 1.3E-79 | 262 | 481 | IPR002913 | START domain |
Pfam | PF01852 | 4.3E-57 | 263 | 481 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.7E-6 | 361 | 480 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.32E-24 | 501 | 680 | No hit | No description |
SuperFamily | SSF55961 | 2.32E-24 | 711 | 750 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0090627 | Biological Process | plant epidermal cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 758 aa Download sequence Send to blast |
MYHPNMFESH HHMFDMTPKT SDNDLGLTGS REDDFETKSG AEVTMENPLE EELQDPNQRP 60 NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRELS LEPLQVKFWF QNKRTQMKAQ 120 HERHENSILK SDNDKLRAEN NRYKDALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE 180 EIDRISAIAA KYVGKPLLAH SSPFPQLTSS HHIPSRSLDL EVGNFGNNNN SQTGFVGEMY 240 GASDILRSVS IPSEADKPMI VELAVAAMEE LLRMAQTGDP LWVSSDNSVE ILNEEEYFRT 300 FPRGIGPKPI GMRSEASRES TVVIMNHINL VEILMDVNQW SSVFCGIVSR ALTLEVLSTG 360 VAGNYNGALQ VMTAEFQVPS PLVPTRENYF VRYCKQHSDN TWAVVDVSLD SLRPSPIIRN 420 RRRPSGCLIQ ELQNGYSKVT WVDHTEVDDR SVHTMYKPLV NTGLAFGAKR WVATLDRQCE 480 RLASSMASNI PAGDLSVITS PEGRKSMLKL AERMVMSFCS GVGASTAHAW TTLTTTGSDD 540 VRVMTRKSMD DPGRPPGIVL SAATSFWIPV APKRVFDFLR DENSRSEWDI LSNGGLVQEM 600 AHIANGRDPG NCVSLLRVNS VNSGQSNMLI LQESCTDASG SYVIYAPVDI MAMNVVLSGG 660 DPDYVALLPS GFAILPDGST RGGNASAGAG AEGGEEENNL EVVTSTGSNC GSLLTVAFQI 720 LVDSVPTAKL SLGSVATVNS LIKCTVERIK AAVACDGA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g19920 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229970 | 0.0 | AK229970.1 Arabidopsis thaliana mRNA for L1 specific homeobox gene ATML1/ovule-specific homeobox protein A20, complete cds, clone: RAFL22-43-B20. | |||
GenBank | AY091104 | 0.0 | AY091104.1 Arabidopsis thaliana putative L1-specific homeobox gene ATML1/ovule-specific homeobox protein A20 (At4g21750) mRNA, complete cds. | |||
GenBank | AY150491 | 0.0 | AY150491.1 Arabidopsis thaliana putative L1-specific homeobox gene ATML1/ovule-specific homeobox protein A20 (At4g21750) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013696499.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_013696501.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_013696503.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 isoform X2 | ||||
Refseq | XP_022546647.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 isoform X1 | ||||
Refseq | XP_022546648.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Swissprot | Q8RWU4 | 0.0 | ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1 | ||||
TrEMBL | A0A3P6ERS8 | 0.0 | A0A3P6ERS8_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g107550.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |