PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g19920
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HD-ZIP
Protein Properties Length: 758aa    MW: 83429 Da    PI: 5.5317
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g19920genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-1963118156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t+ q++eLe++F+++++p+ ++r+eL+++l+L+  qVk+WFqN+R+++k
  Tp7g19920  63 KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRELSLEPLQVKFWFQNKRTQMK 118
                688999***********************************************998 PP
2START216.68.5e-682624811206
                HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
      START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
                ela +a++el+++a+ ++p+Wv+s    e++n++e+ ++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +     +a tlev+s+g
  Tp7g19920 262 ELAVAAMEELLRMAQTGDPLWVSSDnsvEILNEEEYFRTFPRGIGpkpigMRSEASRESTVVIMNHINLVEILMDVN-QWSSVFCgivsRALTLEVLSTG 360
                57899*******************9999**************999********************************.******99999*********** PP

                ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
      START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                      galq+m+ae+q++splvp R+ +fvRy++q+++ +w++vdvS+ds ++ p    ++R +++pSg+li++++ng+skvtwv+h+++++r++h ++
  Tp7g19920 361 vagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHSDNTWAVVDVSLDSLRPSP----IIRNRRRPSGCLIQELQNGYSKVTWVDHTEVDDRSVHTMY 456
                ******************************************************99....7*************************************** PP

                HHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 182 rslvksglaegaktwvatlqrqcek 206
                ++lv++gla+gak+wvatl+rqce+
  Tp7g19920 457 KPLVNTGLAFGAKRWVATLDRQCER 481
                ***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-2244118IPR009057Homeodomain-like
SuperFamilySSF466891.59E-1852120IPR009057Homeodomain-like
PROSITE profilePS5007117.00660120IPR001356Homeobox domain
SMARTSM003891.5E-1761124IPR001356Homeobox domain
PfamPF000467.4E-1763118IPR001356Homeobox domain
CDDcd000862.62E-1863121No hitNo description
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PROSITE profilePS5084846.215253484IPR002913START domain
SuperFamilySSF559611.06E-35255483No hitNo description
CDDcd088753.93E-124257480No hitNo description
SMARTSM002341.3E-79262481IPR002913START domain
PfamPF018524.3E-57263481IPR002913START domain
Gene3DG3DSA:3.30.530.204.7E-6361480IPR023393START-like domain
SuperFamilySSF559612.32E-24501680No hitNo description
SuperFamilySSF559612.32E-24711750No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048825Biological Processcotyledon development
GO:0090627Biological Processplant epidermal cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MYHPNMFESH HHMFDMTPKT SDNDLGLTGS REDDFETKSG AEVTMENPLE EELQDPNQRP  60
NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRELS LEPLQVKFWF QNKRTQMKAQ  120
HERHENSILK SDNDKLRAEN NRYKDALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE  180
EIDRISAIAA KYVGKPLLAH SSPFPQLTSS HHIPSRSLDL EVGNFGNNNN SQTGFVGEMY  240
GASDILRSVS IPSEADKPMI VELAVAAMEE LLRMAQTGDP LWVSSDNSVE ILNEEEYFRT  300
FPRGIGPKPI GMRSEASRES TVVIMNHINL VEILMDVNQW SSVFCGIVSR ALTLEVLSTG  360
VAGNYNGALQ VMTAEFQVPS PLVPTRENYF VRYCKQHSDN TWAVVDVSLD SLRPSPIIRN  420
RRRPSGCLIQ ELQNGYSKVT WVDHTEVDDR SVHTMYKPLV NTGLAFGAKR WVATLDRQCE  480
RLASSMASNI PAGDLSVITS PEGRKSMLKL AERMVMSFCS GVGASTAHAW TTLTTTGSDD  540
VRVMTRKSMD DPGRPPGIVL SAATSFWIPV APKRVFDFLR DENSRSEWDI LSNGGLVQEM  600
AHIANGRDPG NCVSLLRVNS VNSGQSNMLI LQESCTDASG SYVIYAPVDI MAMNVVLSGG  660
DPDYVALLPS GFAILPDGST RGGNASAGAG AEGGEEENNL EVVTSTGSNC GSLLTVAFQI  720
LVDSVPTAKL SLGSVATVNS LIKCTVERIK AAVACDGA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g19920
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2299700.0AK229970.1 Arabidopsis thaliana mRNA for L1 specific homeobox gene ATML1/ovule-specific homeobox protein A20, complete cds, clone: RAFL22-43-B20.
GenBankAY0911040.0AY091104.1 Arabidopsis thaliana putative L1-specific homeobox gene ATML1/ovule-specific homeobox protein A20 (At4g21750) mRNA, complete cds.
GenBankAY1504910.0AY150491.1 Arabidopsis thaliana putative L1-specific homeobox gene ATML1/ovule-specific homeobox protein A20 (At4g21750) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013696499.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_013696501.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_013696503.10.0homeobox-leucine zipper protein MERISTEM L1 isoform X2
RefseqXP_022546647.10.0homeobox-leucine zipper protein MERISTEM L1 isoform X1
RefseqXP_022546648.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A3P6ERS80.0A0A3P6ERS8_BRAOL; Uncharacterized protein
STRINGBo7g107550.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]