PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g19560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB | ||||||||
Protein Properties | Length: 347aa MW: 39800.1 Da PI: 6.6229 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++lv++++++G g+W+t ++ g+ R++k+c++rw +yl Tp7g19560 14 KGPWTSEEDQKLVEYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52 | 1.7e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ Tp7g19560 67 RGRFSFEEEETIIQLHSFLGNK-WSAIAARLP-GRTDNEIKNFWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.979 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.23E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.234 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.55E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MGRSPCCEKN GLKKGPWTSE EDQKLVEYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSFLGNKWS AIAARLPGRT DNEIKNFWNT HIRKKLLRMG 120 IDPVTHSPRL DLLDISSILA SSLYNSSSHH VNMSRLMMDA HRQQQQHPLV NPEILKLATS 180 LFSQNQNQNQ NQNQNQNQNF VVDHEAKTHE NHTVYQHDVN QTGVNQYQTD HQELQSCMPP 240 FPNEAQYNDM DHQFNGFGEL NLATTSNTFN DYASSSFVLD PSYSERSFNF ANSVLNTPSS 300 SPTTLNSSST TYINSSSCST EDEMESYCSN LMKFDIPDFL DVNGFII |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g19560 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY087252 | 0.0 | AY087252.1 Arabidopsis thaliana clone 33333 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022550348.1 | 0.0 | transcription factor MYB102-like | ||||
Swissprot | Q9LDR8 | 0.0 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A078JE85 | 0.0 | A0A078JE85_BRANA; BnaC01g41180D protein | ||||
TrEMBL | A0A3N6SZ65 | 0.0 | A0A3N6SZ65_BRACR; Uncharacterized protein | ||||
TrEMBL | A0A3P6FQ89 | 0.0 | A0A3P6FQ89_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g107420.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-175 | MYB-like 102 |
Publications ? help Back to Top | |||
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