PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g18220
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 747aa    MW: 84968 Da    PI: 5.4691
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g18220genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.3e-14427471146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r  WT+eEd+ l  av ++G ++W ++a+++  gRt+ qc +rw k
        Tp7g18220 427 RREWTAEEDDHLCAAVGLFGEKDWQSVANELK-GRTGTQCSNRWKK 471
                      678****************************9.***********98 PP
2Myb_DNA-binding408.8e-13480524146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+W+ eE ++l+ av+++G + W  Ia+ ++ gRt  qc+ +w +
        Tp7g18220 480 KGSWSSEEGKRLKVAVTLFGAKKWPQIAQFVP-GRTQSQCRAKWET 524
                      799*****************************.***********76 PP
3Myb_DNA-binding25.82.6e-08531584145
                      TSSS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwq 45 
                      rg WT+eE  +l +a + l ++           W+++a+++   R +kqc  +w 
        Tp7g18220 531 RGDWTEEEKTKLEEATRDLETKlknnvfdehgYWSKVASCVS-SRNRKQCEKKWK 584
                      899***************************************.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071711279370IPR001005SANT/Myb domain
PROSITE profilePS500904.728280368IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-5282298IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-5344380IPR009057Homeodomain-like
SuperFamilySSF466892.78E-11352418IPR009057Homeodomain-like
PROSITE profilePS500907.828369421IPR017877Myb-like domain
SMARTSM007177.5E-4373423IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-11381430IPR009057Homeodomain-like
SuperFamilySSF466892.42E-19406477IPR009057Homeodomain-like
PROSITE profilePS5129422.225422477IPR017930Myb domain
SMARTSM007172.2E-12426475IPR001005SANT/Myb domain
PfamPF002492.7E-12427471IPR001005SANT/Myb domain
CDDcd001677.57E-10429473No hitNo description
Gene3DG3DSA:1.10.10.601.1E-16431478IPR009057Homeodomain-like
SuperFamilySSF466896.75E-15477539IPR009057Homeodomain-like
PROSITE profilePS5129413.762479529IPR017930Myb domain
SMARTSM007178.0E-10479528IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-17481533IPR009057Homeodomain-like
CDDcd001671.60E-8482525No hitNo description
PfamPF139212.2E-11483542No hitNo description
SuperFamilySSF466898.97E-8525588IPR009057Homeodomain-like
PROSITE profilePS500908.757527587IPR017877Myb-like domain
SMARTSM007171.1E-5530589IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-9534592IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MNLESMYESD GDDDDDIGED LEDLRRACMV SDSNSASVGC DGGVMPSDSE NEDDFEMVRS  60
IKSQLASSTD PPMGLSSVPS DSESEDDFEM LRSIKSQLAL SMDEEDEDNA FDETLRAICR  120
RFFAYENSEE VEAGHVHENT SIEPLDHLET SLTPDASSST FPESAQYFVD AIRRNRSYKK  180
LLQRKLGEIE ATIKKNEELQ KNIKIIKDFT ASCKRRINKQ AISQSKDPRF ELISTRKSGF  240
PDSSQCNGKR KSPLTLGPPE NPCVANYRMT LEEYPVSVGR TNWSAKENEN LAKGLKQQLQ  300
ETLVLEATER SCGFEGCTDD INTILESIRN LEITPEMIRQ FLPKVNWDRL DIKNRSAAEC  360
EARWMSSEDP LINQGPWTAA EDDYIRLVTQ NKSFTDWLDI AVSLGTNRTP FQCLARYQRS  420
LNADILRREW TAEEDDHLCA AVGLFGEKDW QSVANELKGR TGTQCSNRWK KSLHPTIETK  480
GSWSSEEGKR LKVAVTLFGA KKWPQIAQFV PGRTQSQCRA KWETLDPKVK RGDWTEEEKT  540
KLEEATRDLE TKLKNNVFDE HGYWSKVASC VSSRNRKQCE KKWKALNPHL KRLQQELKRL  600
QREATVGNFV DRESERPDLL ASDFLALGEI SLAPEPSLKK KRKARQKKAD AECESEAFCV  660
DTERQPKRRR KGLEKCSGDG CRQESESETE DNVREKKKRR KRKTVAGTSN NSSETTNCSQ  720
VKIGIKKLEP RRKVSAVVLI ENQDAPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-242775833155MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-242775833155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1695699KKKRR
2695700KKKRRK
3696700KKRRK
4696702KKRRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g18220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022550321.10.0snRNA-activating protein complex subunit 4-like
TrEMBLD7MG960.0D7MG96_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_70019620.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1