PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g17470
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 330aa    MW: 38690 Da    PI: 8.5643
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g17470genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.28.8e-19121167148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +l+++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
        Tp7g17470 121 KGQWTAEEDRILIQLVEKYGLRKWSHIAQVLP-GRIGKQCRERWHNHL 167
                      799*****************************.*************97 PP
2Myb_DNA-binding53.45.8e-17173215145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +  W++eEd  l+d +k+ G++ W+ Ia++++ gRt++++k++w+
        Tp7g17470 173 KETWSEEEDRVLIDFHKEIGNK-WAEIAKRLP-GRTENSIKNHWN 215
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129430.621116171IPR017930Myb domain
SuperFamilySSF466891.02E-32119214IPR009057Homeodomain-like
SMARTSM007173.7E-18120169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-27122173IPR009057Homeodomain-like
CDDcd001672.74E-16124167No hitNo description
PfamPF139218.4E-21124181No hitNo description
SMARTSM007176.0E-16172220IPR001005SANT/Myb domain
PROSITE profilePS5129420.813172222IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-22174221IPR009057Homeodomain-like
CDDcd001675.17E-12175218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MVDFYESKPH LMNHHFQAAE TPYFTRNHHH HEINLVDEHD PMDLEQNNMM MMRMIPFDYP  60
PTEIIKPMNF AMQDEVSCVS AENDCYKAMS FNKTKPFLTR KLSSSSSSSS WKGKKKSTLV  120
KGQWTAEEDR ILIQLVEKYG LRKWSHIAQV LPGRIGKQCR ERWHNHLRPD IKKETWSEEE  180
DRVLIDFHKE IGNKWAEIAK RLPGRTENSI KNHWNATKRR QFSKRKCRSK YPRPSLLQDY  240
IKSLDLGALS SSSVPARGRR RESNKKKDIV AVEEKKKKEE EIYGQDRIVP ECVFTDDFGF  300
NEKLLEEGCS IDSLLDDLPQ PDIDAFVHGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-461192222105C-Myb DNA-Binding Domain
1msf_C9e-461192222105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258277RRRESNKKKDIVAVEEKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g17470
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1760030.0AF176003.2 Arabidopsis thaliana putative transcription factor (MYB98) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006414060.10.0transcription factor MYB98
SwissprotQ9S7L20.0MYB98_ARATH; Transcription factor MYB98
TrEMBLV4MQV40.0V4MQV4_EUTSA; Uncharacterized protein
STRINGBostr.30275s0352.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58692847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.10.0myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]