PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g17370
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ERF
Protein Properties Length: 184aa    MW: 20522 Da    PI: 9.8737
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g17370genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19e-184089255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Tp7g17370 40 NFRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDVAALAIKG 89
               59****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.99E-333999No hitNo description
PfamPF008477.2E-123989IPR001471AP2/ERF domain
SMARTSM003801.7E-3840103IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-214098IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-324098IPR001471AP2/ERF domain
PROSITE profilePS5103222.7084097IPR001471AP2/ERF domain
PRINTSPR003671.8E-104152IPR001471AP2/ERF domain
PRINTSPR003671.8E-106379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MQDSSLPRSE RNLRSPAPER RTGKNSKTKN EQKGVSKHPN FRGVRMRQWG KWVSEIREPR  60
KKSRIWLGTF STAEMAARAH DVAALAIKGG SAHLNFPELA RRLPRPASAD PKDIQAAATA  120
AAVEWKAAES PSSTMTSPMT SLSSVADDAF SDLPDLLLDA NDHKIDGFFW DSFPYEETFS  180
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3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-173397672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00436DAPTransfer from AT4G16750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g17370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481906.11e-101PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ9SUK83e-90ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLA0A078K0951e-96A0A078K095_BRANA; BnaCnng77210D protein
TrEMBLA0A3P6G7331e-96A0A3P6G733_BRAOL; Uncharacterized protein
STRINGBra040092.1-P5e-97(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.15e-87ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]