PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g16100
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ARR-B
Protein Properties Length: 533aa    MW: 59416.2 Da    PI: 6.2774
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g16100genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.72.3e-27304357256
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                ++++Wt+eLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQk+R++
  Tp7g16100 304 KKVDWTQELHKKFVQAVEQL-GIDQAIPSRILELMKVDGLTRHNVASHLQKFRMH 357
                689*****************.********************************96 PP
2Response_reg29.63.4e-11201281109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ d ++l +   r+ le+ +y +v++++d  eal  + ++   +++ ++ ++ + ++  e +k ++++++ lp i+++     +++ +++ +Ga 
     Tp7g16100  20 VLLLDGDNLSAAETRSKLESMDY-VVTTFSDEAEALSAVFKNPesFHIAIVEVNTSAVEN-ESFKFLEAAKDLLPTIMISNDHCITTTMKCIALGAV 114
                   78888899999999999******.**************9555556************986.66799999999********9999************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   +fl Kp +pe+l +
     Tp7g16100 115 EFLQKPLSPEKLKN 128
                   ***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.7E-1616161No hitNo description
SuperFamilySSF521728.54E-1516136IPR011006CheY-like superfamily
PROSITE profilePS5011024.39719134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-720128IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.91E-721133No hitNo description
PROSITE profilePS5129415.82300359IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-26301359IPR009057Homeodomain-like
SuperFamilySSF466892.33E-18302360IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-25304357IPR006447Myb domain, plants
PfamPF002496.0E-7306354IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MVLTANDLSK WENFPKGLRV LLLDGDNLSA AETRSKLESM DYVVTTFSDE AEALSAVFKN  60
PESFHIAIVE VNTSAVENES FKFLEAAKDL LPTIMISNDH CITTTMKCIA LGAVEFLQKP  120
LSPEKLKNIW QHVVHKAFSD GGTSVSESLK PVKESVVSML HLDTDMTIDE KDPAPSTPQL  180
KQVSRLLDGD RQENITCSVE YVNSPTEKEN SEDHDIGESK SVDTTNHELI DDNVIVKEEK  240
GDGEKEKEEE GETGGLREVK QGETGDLKNE KTDSVNLQKK VDDNRPVNKS SGIKNLCGNK  300
TSRKKVDWTQ ELHKKFVQAV EQLGIDQAIP SRILELMKVD GLTRHNVASH LQKFRMHRRN  360
ILPKEDHNHR WIQSRENHRQ IQRQYNGFQQ QHRPVMAYPV WGLPGVHPPG AVRPLWPPPL  420
QSSGQLPPWH WKPPYPTVNG NAWGCPVGPP VTGTFISPPV TGTFNTPPPT QLDEEMIDQV  480
VKEAISKPWL PLPLGLKPPS AESVLAELSR QGISAVPSSS TSSCLINGSR RLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-16301356158ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g16100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136894.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009136895.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009136896.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_009136897.10.0PREDICTED: two-component response regulator-like APRR2
RefseqXP_013707283.10.0two-component response regulator-like APRR2
RefseqXP_013707284.10.0two-component response regulator-like APRR2
RefseqXP_013707285.10.0two-component response regulator-like APRR2
RefseqXP_013707286.10.0two-component response regulator-like APRR2
SwissprotQ6LA430.0APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLM4D8130.0M4D813_BRARP; Uncharacterized protein
STRINGBra012623.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57462747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.60.0ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]