PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g14960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bHLH | ||||||||
Protein Properties | Length: 466aa MW: 52059.7 Da PI: 6.7855 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.9 | 1.6e-12 | 319 | 365 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI ++q Tp7g14960 319 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 365 799***********************66......***************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 7.5E-41 | 49 | 225 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.234 | 315 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-17 | 315 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.05E-14 | 318 | 369 | No hit | No description |
Pfam | PF00010 | 4.1E-10 | 319 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 319 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-14 | 321 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MGQKFWENQE DRAMMESTIG SEACDFFISS ASSNTALTKL VAPPSDPNLQ QGLRHVVEGS 60 DWDYALFWLA SNVNSSDGCV LIWGDGHCRV KKGNSGEDYS QQDETKRRVL SKLHLSFVGS 120 DEDHRLVKSG ALTDLDMFYL ASLYFSFRCD STKYGPAGTY VSGKPLWAAD LPSCLSYYRV 180 RSFLARSAGF KTVLSVPVNC GVVELGSLKL IPEDKSVIEM VKSVFGGSDF VQAKEAPKIF 240 GRQLSLGGSK PRSMSINFSP KMEDDSGFSL ESYEVQAVGG SNQVYGYEQG KDEALYLTDE 300 QKPRKRGRKP ANGREEALNH VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLADAITY 360 ITDMQKKIRV YETEKQIMKR RESNQITPAE VDYQQRHDDA VVRLSCPLDT HPVSKVIQTL 420 RENEVTPHDS NVAVTEEGVV HTFTLRPQVG CTAEQLKDKL LASLSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-26 | 313 | 375 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 5e-26 | 313 | 375 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 5e-26 | 313 | 375 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 5e-26 | 313 | 375 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 5e-26 | 313 | 375 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 5e-26 | 313 | 375 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 5e-26 | 313 | 375 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 5e-26 | 313 | 375 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00099 | PBM | Transfer from AT4G16430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g14960 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL161544 | 0.0 | AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | Z97341 | 0.0 | Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024004378.1 | 0.0 | transcription factor bHLH3 isoform X1 | ||||
Swissprot | O23487 | 0.0 | BH003_ARATH; Transcription factor bHLH3 | ||||
TrEMBL | V4MRH9 | 0.0 | V4MRH9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006414350.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6611 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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