PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g14650

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

CAMTA

Protein Properties

Length: 922aa MW: 104784 Da PI: 7.5736

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g14650	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	162	1.1e-50	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 +e +rwl+++ei+a+L n++ +++ ++ t pksg+++L++rk++r+fr+DG++wkkkkdgkt++E+he+LKvg+ e +++yYah+++nptf rrcywl Tp7g14650 30 EEaYSRWLRPNEIHALLCNHKYFTINVKPVTLPKSGTIVLFDRKMLRNFRRDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGDDNPTFVRRCYWL 129 55589********************************************************************************************* PP CG-1 102 Leeelekivlvhylevk 118 L++++e+ivlvhy+e++ Tp7g14650 130 LDKSKEHIVLVHYRETH 146 ************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.062	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.0E-75	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	8.3E-45	32	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	3.5E-13	374	460	IPR014756	Immunoglobulin E-set
CDD	cd00204	1.15E-13	560	670	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.1E-15	561	673	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	5.4E-7	561	640	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.51E-15	569	679	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	13.947	578	643	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.995	611	643	IPR002110	Ankyrin repeat
SMART	SM00248	2.2E-6	611	640	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	7.199	760	786	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	69	775	797	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0017	798	820	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.523	799	823	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	874	896	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.279	875	904	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 922 aa Download sequence Send to blast
MSGVDSGKLI GSEIHGFHTL QDLDIQTMLE EAYSRWLRPN EIHALLCNHK YFTINVKPVT 60 LPKSGTIVLF DRKMLRNFRR DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP 120 TFVRRCYWLL DKSKEHIVLV HYRETHEVSA APTTPGNSYS SSITDHLSPK PVVEDINSGI 180 SNACNTGFEA RSNSLVSRNH EIRLHEINTL DWDELLIPAD ISNQSPPTEE DVLFFTEQLQ 240 TAPRGSSKQG NHLAGYNVST DIPSFLGLGD PVYQNNNPCG AGEFSSQHLH CVVDPNLQRR 300 DSSAIVTDEA GDAVLNNGYG SQESFGKWVN NFISDSSGSV EDPSLEAVFT PGQESSAPPA 360 VFHSQSNIPE QVFNITDISP AWAYSTEKTK ILVTGFFHDS FQYFGRSNLF CICGELRVPA 420 EFLQIGVYRC FLPPQSPGVV NLYLSADGNK PISQLFSFEH RPVPVIEKVI LQDDQLFKWE 480 EFEFQVRLAH LLFTSSNKIS VFSSKISPDN LLEAKKLASR TSHLLNSWAY LMKSIQANEV 540 PFDQARDHLF ELTLKNRLKE WLLEKVIENR NTKEYDSKGL GVIHLCAVLG YTWSILLFSW 600 ANISLDFRDK NGWTALHWAA YYGREKMVAA LLSAGARPNL VTDPSKEYLG GCTAADLAQQ 660 KGYEGLAAFL AEKCLVAQFR DMKMAGNISG NLETIKAETS TNPGHSNEEE QSLKDTLAAY 720 RTAAEAAARI QGAFREHELK VRSSAVRFSS KEEEAKNIVA AMRIQHAFRN YETRRKIAAA 780 ARIQYTFQAW KMRREFLNLR NKAIRIQAVF RGFQVRRQYQ KITWSVGVLE KAILRWRMKR 840 KGFRGLQVSQ PEQKEGTEAV EDFYKTSQKQ AEERLERSVV RVQAMFRSKK AQQDYRRMKL 900 AHEQAQLEYD EMQELDQTAM ES

Sequence ? help Back to Top

Protein Sequence Length: 922 aa Download sequence Send to blast

MSGVDSGKLI GSEIHGFHTL QDLDIQTMLE EAYSRWLRPN EIHALLCNHK YFTINVKPVT  60
LPKSGTIVLF DRKMLRNFRR DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGDDNP  120
TFVRRCYWLL DKSKEHIVLV HYRETHEVSA APTTPGNSYS SSITDHLSPK PVVEDINSGI  180
SNACNTGFEA RSNSLVSRNH EIRLHEINTL DWDELLIPAD ISNQSPPTEE DVLFFTEQLQ  240
TAPRGSSKQG NHLAGYNVST DIPSFLGLGD PVYQNNNPCG AGEFSSQHLH CVVDPNLQRR  300
DSSAIVTDEA GDAVLNNGYG SQESFGKWVN NFISDSSGSV EDPSLEAVFT PGQESSAPPA  360
VFHSQSNIPE QVFNITDISP AWAYSTEKTK ILVTGFFHDS FQYFGRSNLF CICGELRVPA  420
EFLQIGVYRC FLPPQSPGVV NLYLSADGNK PISQLFSFEH RPVPVIEKVI LQDDQLFKWE  480
EFEFQVRLAH LLFTSSNKIS VFSSKISPDN LLEAKKLASR TSHLLNSWAY LMKSIQANEV  540
PFDQARDHLF ELTLKNRLKE WLLEKVIENR NTKEYDSKGL GVIHLCAVLG YTWSILLFSW  600
ANISLDFRDK NGWTALHWAA YYGREKMVAA LLSAGARPNL VTDPSKEYLG GCTAADLAQQ  660
KGYEGLAAFL AEKCLVAQFR DMKMAGNISG NLETIKAETS TNPGHSNEEE QSLKDTLAAY  720
RTAAEAAARI QGAFREHELK VRSSAVRFSS KEEEAKNIVA AMRIQHAFRN YETRRKIAAA  780
ARIQYTFQAW KMRREFLNLR NKAIRIQAVF RGFQVRRQYQ KITWSVGVLE KAILRWRMKR  840
KGFRGLQVSQ PEQKEGTEAV EDFYKTSQKQ AEERLERSVV RVQAMFRSKK AQQDYRRMKL  900
AHEQAQLEYD EMQELDQTAM ES

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g14650

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY128295	0.0	AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013711273.1	0.0	calmodulin-binding transcription activator 5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A3P6GMJ4	0.0	A0A3P6GMJ4_BRAOL; Uncharacterized protein
STRING	AT4G16150.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4021	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]