PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g12010

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 332aa MW: 36942.5 Da PI: 6.1772

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g12010	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.5	3.3e-10	176	223	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++i +++ L+ l+P + ++ Ka +L + ++Y++sLq Tp7g12010 176 SHSIAERVRREKISERMKLLQNLVPGC----NRITGKAVMLDEIINYVQSLQ 223 8************************....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.86E-10	170	227	No hit	No description
SuperFamily	SSF47459	1.14E-16	170	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-17	172	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.535	172	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-7	176	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.2E-10	178	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MFRLIMDKET EETLNCLLPF GNGSDAMMIS DLIGRFCDTQ EISPLSLHSF SENFPIRFPY 60 PPQFGPNQVL ESQPTTQESN KSSLLDPGSV SGTAKTKHNA RKRKSISTGS EKESPASSSL 120 TASNSKISEE KSATVAGKRS KQNETEKNEN KNDEKPPEPF KDYIHVRARR GQATDSHSIA 180 ERVRREKISE RMKLLQNLVP GCNRITGKAV MLDEIINYVQ SLQRQVEFLS MKLATINSRT 240 EFNANAILSA EMLQLGESLS QSISCSEASF PSGYFAIGKS IPSEGFVQAE AATAFWENDL 300 QSLVQMGFRD SQQQSIINCS EPTIQMKLEP ER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g12010

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006414788.1	1e-171	transcription factor bHLH77 isoform X1
Swissprot	Q9LK48	1e-143	BH077_ARATH; Transcription factor bHLH77
TrEMBL	A0A397ZDE8	1e-170	A0A397ZDE8_BRACM; Uncharacterized protein
TrEMBL	V4P9A4	1e-170	V4P9A4_EUTSA; Uncharacterized protein
STRING	XP_006414788.1	1e-170	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7406	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	1e-123	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]