PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g11770

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

HSF

Protein Properties

Length: 476aa MW: 53048.7 Da PI: 6.7133

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g11770	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.5	1.2e-34	28	118	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d+++++++sws+++nsf+v+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k+++e+ weF+++ F k++k+ll++i+ Tp7g11770 28 FLVKTYDMVDDSSTDQIVSWSATNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDSER---------WEFSNDDFIKDQKHLLKNIH 115 9******************999*************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Tp7g11770 116 RRK 118 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.6E-61	24	117	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	9.93E-35	24	117	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.7E-37	24	117	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	5.4E-30	28	117	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.6E-19	28	51	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.6E-19	66	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	67	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.6E-19	79	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MNGESGNSSA SVSGSGGGGE GAGGPAPFLV KTYDMVDDSS TDQIVSWSAT NNSFIVWNHA 60 EFSRLLLPTY FKHNNFSSFI RQLNTYGFRK IDSERWEFSN DDFIKDQKHL LKNIHRRKPI 120 HSHSHPPISS VDQERAALQE QMDKLSREKA AIEAKLLKFK QQKSTAKHNL DEMTEHVGDM 180 EKRQKKLLNF LETAIRNPTF IKNFGRKVEQ LDISAYNKKR RLPQVEQSKP PSDDSHLDNS 240 SGSSRPESGN IFYQNFSSKL RLELSPAVSD MNMVSHSIQS SNEDGASPKG IQTGSDPKTT 300 QLRREGLPFA PEALELADTG SCPGRLLLND NTRAEPLQQR ITSSEETDGS FSCHLNLTLA 360 SAPLPDKTAS QIAKTSHKIQ EIGRGTELNF NSIEISASEK NCGQQEVAVG GKQANAAPPA 420 RVNDVFWEQF LTERPGSSDN EEASSTYRAN PYEEQEERRN GNMMSRNTKN IEQLTL

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MNGESGNSSA SVSGSGGGGE GAGGPAPFLV KTYDMVDDSS TDQIVSWSAT NNSFIVWNHA  60
EFSRLLLPTY FKHNNFSSFI RQLNTYGFRK IDSERWEFSN DDFIKDQKHL LKNIHRRKPI  120
HSHSHPPISS VDQERAALQE QMDKLSREKA AIEAKLLKFK QQKSTAKHNL DEMTEHVGDM  180
EKRQKKLLNF LETAIRNPTF IKNFGRKVEQ LDISAYNKKR RLPQVEQSKP PSDDSHLDNS  240
SGSSRPESGN IFYQNFSSKL RLELSPAVSD MNMVSHSIQS SNEDGASPKG IQTGSDPKTT  300
QLRREGLPFA PEALELADTG SCPGRLLLND NTRAEPLQQR ITSSEETDGS FSCHLNLTLA  360
SAPLPDKTAS QIAKTSHKIQ EIGRGTELNF NSIEISASEK NCGQQEVAVG GKQANAAPPA  420
RVNDVFWEQF LTERPGSSDN EEASSTYRAN PYEEQEERRN GNMMSRNTKN IEQLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-23	19	117	17	129	Heat shock factor protein 1
5d5v_B	3e-23	19	117	17	129	Heat shock factor protein 1
5d5v_D	3e-23	19	117	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g11770

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013637590.1	0.0	PREDICTED: heat stress transcription factor A-5
Refseq	XP_013637593.1	0.0	PREDICTED: heat stress transcription factor A-5
Swissprot	Q94BZ5	0.0	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A3P6BZV8	0.0	A0A3P6BZV8_BRACM; Uncharacterized protein
STRING	Bostr.9017s0008.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10134	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	0.0	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]