PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g11350

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

G2-like

Protein Properties

Length: 290aa MW: 31578.7 Da PI: 7.0883

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g11350	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.7	6.4e-34	37	91	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt+eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Tp7g11350 37 KPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 91 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-32	34	93	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.541	34	94	IPR017930	Myb domain
SuperFamily	SSF46689	4.66E-17	36	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-24	37	92	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-7	39	89	IPR001005	SANT/Myb domain
Pfam	PF14379	1.2E-26	135	181	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0010628	Biological Process	positive regulation of gene expression
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MYSAIRSSLP LDGSMGEYSD GTNLPVDACL VLTTDPKPRL RWTSELHERF VDAVTQLGGP 60 DKATPKTIMR TMGVKGLTLY HLKSHLQKFR LGRQSCKEST ENSKDVSCVA ESQDTGSSSS 120 SSLRIAAQEQ NESYQVTEAL RAQMEVQRRL HEQLEVQRRL QLRIEAQGKY LQTILEKACK 180 AIDEQAVAFA GLEAAREELS ELAIKVSNGC QGTTSPFDTT KMTVPSLSEL AVVIEHKNNC 240 SAESSLTSST VGSPVSAVLM KKRQRGVFGN GDSVVLGHEA GWVMPSSSIG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-20	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-20	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-20	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-20	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g11350

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353235	0.0	AK353235.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-27-H18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006284217.1	0.0	protein PHR1-LIKE 3 isoform X2
Swissprot	Q8LAJ7	0.0	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	R0GXT3	0.0	R0GXT3_9BRAS; Uncharacterized protein
STRING	Cagra.6748s0004.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3515	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	0.0	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]