PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g11070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB | ||||||||
Protein Properties | Length: 268aa MW: 31127.2 Da PI: 9.7783 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.7 | 2.3e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll+++v+ +G g+W+++ar g++R +k+c++rw +yl Tp7g11070 15 KGPWTGEEDRLLIEYVRVHGEGRWNSVARLTGLKRNGKSCRLRWVNYL 62 79******************************9*************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1e-16 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ Tp7g11070 68 RGQITPHEESIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 112 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.551 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-30 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.2E-16 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.08E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 24.358 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-14 | 68 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 70 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.09E-10 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MSWWGVKEVA EAWRKGPWTG EEDRLLIEYV RVHGEGRWNS VARLTGLKRN GKSCRLRWVN 60 YLRPDLKRGQ ITPHEESIIL ELHAKWGNRW STIARSLPGR TDNEIKNYWR THFKKKTKPA 120 TNSAEKTKNL LLKRQQFKQQ RQMELQQEQQ LFQFDQLDMK KIMSLLEDNS SSSSSVGVDM 180 FYDSPQMIHS STASGNINPN SLEEQLQGRF APANIPETTT INEELSIWDR FWNLDTEDRN 240 GGNLGIVAAT APCGPRKHYF HNLVIPFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 15 | 117 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g11070 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285781.2 | 1e-145 | transcription repressor MYB6 | ||||
TrEMBL | R0GP77 | 1e-144 | R0GP77_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.2021s0106.1.p | 1e-145 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3107 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 1e-120 | myb domain protein 79 |