PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g06800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB | ||||||||
Protein Properties | Length: 265aa MW: 30245.2 Da PI: 8.4925 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.3e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed++l d++ +G g W+t ++ g++R++k+c++rw +yl Tp7g06800 16 RGAWTDQEDKILRDYIMIHGEGKWSTLPNQAGLKRCGKSCRLRWKNYL 63 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ Tp7g06800 69 RGNISSDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNHWNSN 113 78999*****************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 8 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.545 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.01E-28 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.9E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.82E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.564 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 69 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.24E-10 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0090379 | Biological Process | secondary cell wall biogenesis involved in seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MGKRASTSVK KDELNRGAWT DQEDKILRDY IMIHGEGKWS TLPNQAGLKR CGKSCRLRWK 60 NYLRPGIKRG NISSDEEELI IRLHNLLGNR WSLIAGRLPG RTDNEIKNHW NSNLRKRLPK 120 LQTKQPKSGK HLMDDKNNVC VIRTKAIRCS KALNFQKQSS STSLLPLKDQ EQVNNVMDHQ 180 ASSSLLGDLE IDFDKIQSEF LFPDLMDFAG LGCGNVTSLV SSDEVLGDFV RADDSSQSNL 240 DLNRPFTSCL HRNDDEEDWL RDFNC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-26 | 13 | 118 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g06800 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006403096.1 | 1e-165 | transcription factor TT2 isoform X1 | ||||
Swissprot | Q9FJA2 | 1e-148 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | V4LLF6 | 1e-164 | V4LLF6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006403096.1 | 1e-164 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 1e-150 | MYB family protein |