PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g04640

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GeBP

Protein Properties

Length: 301aa MW: 34511.2 Da PI: 5.2307

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g04640	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	95.4	5.6e-30	64	159	3	98
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 +++ w+++ e+v+L+G++++++++g s+ d+d fy +vk+ i++++sk+ql++Ki++LKk+f + +++k++k+ +f++++d+++f ls+ iWg+ Tp7g04640 64 SKMKWTKNNELVILKGILEYENEKGFSYACDWDVFYGYVKDLIDADFSKKQLMSKIKKLKKRFSDVIARSKDEKDLTFTHTDDEQVFRLSMTIWGK 159 6889******************************************************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.8E-23	66	158	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MVDSSDSNTD GFEIRENRTP MKRKHDIDDN DDEEDISGTE AMLRRRKQPK KNTMPLVSSS 60 SPTSKMKWTK NNELVILKGI LEYENEKGFS YACDWDVFYG YVKDLIDADF SKKQLMSKIK 120 KLKKRFSDVI ARSKDEKDLT FTHTDDEQVF RLSMTIWGKN ETRCATNENM QDQPKNVRVK 180 LTSIVVMDLQ EVLVPVKDVP CAEHEPGSYK RMGIEKKCDE EEGGEDEFCV LQDALEGVTF 240 FQSLGKNQKK VLSQNLKNLP AQSRKELIDE WEALLDEEMK LNIKKLTFSA KLANANAGVS 300 A

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g04640

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024014802.1	3e-94	GLABROUS1 enhancer-binding protein-like 3 isoform X3
Swissprot	Q9SJM4	5e-38	STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBL	A0A1J3E0B0	1e-77	A0A1J3E0B0_NOCCA; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12440	15	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	2e-32	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]