PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g02350
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Dof
Protein Properties Length: 466aa    MW: 50595.7 Da    PI: 4.7509
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g02350genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.63.2e-39140199261
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ 
  Tp7g02350 140 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKSP 199
                7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-32136197IPR003851Zinc finger, Dof-type
PfamPF027016.5E-32142198IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.612144198IPR003851Zinc finger, Dof-type
PROSITE patternPS013610146182IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MSDPAIKLFG KTIPLPELIG GDSSSSYTGV LTEQPQDQNL VRLSDSCTGD DEEMGDSGLR  60
GEGGDDDDGG GDSECEKEIQ EENDNECEEE HREESLRDES SNVGATSGIT EKTETTKAGK  120
TDEESSQNGT CSQEAKLKKP DKILPCPRCN SMETKFCYYN NYNVNQPRHF CKKCQRYWTA  180
GGTMRNVPVG AGRRKNKSPA SHYNRHVSIT SAEAMQKAAR TADLQHPNGT NLLTFGSDSV  240
LCESLASGLN VAEKSMLKTQ TGLQEANEGL KITVPSNPSN EEAGTVSPLP KVPCFPGPPP  300
PTWPYAWNGV SWTVVPFYPP PAYWSCPGVS PGTWNSFSWM PQPTSPSGGS GPNSPTLGKH  360
SREESIAEPG TALEETESLG REKSKPERCL WVPKTLRIDD PEEAAKSSIW ETLGINKDEK  420
ADTFGAFRPS NKEKNSLSDG KLPGRRLELQ ANPAALSRSA NFHESS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g02350
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001318708.10.0cycling DOF factor 2
RefseqNP_568567.10.0cycling DOF factor 2
RefseqNP_851106.10.0cycling DOF factor 2
SwissprotQ93ZL50.0CDF2_ARATH; Cyclic dof factor 2
TrEMBLA0A178UGH80.0A0A178UGH8_ARATH; CDF2
STRINGBostr.10058s0036.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137951825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.20.0cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]